Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28BQ9BUN5 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 SDHAP2-201ENST00000455183 2001 ntBASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 AC124016.1-201ENST00000609552 612 ntBASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 AL031985.4-201ENST00000642138 673 ntBASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 AL023806.1-201ENST00000603994 1649 ntBASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 NKILA-202ENST00000614771 2598 ntBASIC17.71■□□□□ 0.43
CCDC28BQ9BUN5 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC28BQ9BUN5 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC28BQ9BUN5 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.71■□□□□ 0.42
CCDC28BQ9BUN5 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC28BQ9BUN5 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.71■□□□□ 0.42
CCDC28BQ9BUN5 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 MIR149-201ENST00000384879 89 ntBASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 KRT16P1-201ENST00000399124 1418 ntBASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28BQ9BUN5 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 AC009102.3-201ENST00000623118 1491 ntBASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 AL163051.1-201ENST00000569214 1512 ntBASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms