Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPNE1Q99829 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPNE1Q99829 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CPNE1Q99829 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CPNE1Q99829 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE1Q99829 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CPNE1Q99829 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.19■□□□□ 0.5
CPNE1Q99829 AC007663.1-201ENST00000438948 1240 ntBASIC18.19■□□□□ 0.5
CPNE1Q99829 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE1Q99829 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 AP000525.1-201ENST00000608286 694 ntBASIC18.19■□□□□ 0.5
CPNE1Q99829 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CPNE1Q99829 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.19■□□□□ 0.5
CPNE1Q99829 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CPNE1Q99829 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE1Q99829 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 MIR718-201ENST00000390190 70 ntBASIC18.18■□□□□ 0.5
CPNE1Q99829 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE1Q99829 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CPNE1Q99829 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE1Q99829 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.18■□□□□ 0.5
CPNE1Q99829 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE1Q99829 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE1Q99829 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CPNE1Q99829 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE1Q99829 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE1Q99829 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE1Q99829 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE1Q99829 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPNE1Q99829 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
CPNE1Q99829 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CPNE1Q99829 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE1Q99829 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 C2orf69P3-201ENST00000565542 1120 ntBASIC18.17■□□□□ 0.5
CPNE1Q99829 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.17■□□□□ 0.5
CPNE1Q99829 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 AC010653.2-201ENST00000623505 997 ntBASIC18.17■□□□□ 0.5
CPNE1Q99829 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE1Q99829 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
CPNE1Q99829 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE1Q99829 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE1Q99829 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms