Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AL358472.4-201ENST00000633140 710 ntBASIC18.05■□□□□ 0.48
VPS35Q96QK1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VPS35Q96QK1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VPS35Q96QK1 IER3-202ENST00000376377 1350 ntBASIC18.04■□□□□ 0.48
VPS35Q96QK1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 GPR32P1-201ENST00000601788 811 ntBASIC18.04■□□□□ 0.48
VPS35Q96QK1 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.04■□□□□ 0.48
VPS35Q96QK1 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS35Q96QK1 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.04■□□□□ 0.48
VPS35Q96QK1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 RNF126P1-202ENST00000569893 925 ntBASIC18.03■□□□□ 0.48
VPS35Q96QK1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 AC011498.5-201ENST00000592027 486 ntBASIC18.03■□□□□ 0.48
VPS35Q96QK1 AL390719.2-201ENST00000606993 987 ntBASIC18.03■□□□□ 0.48
VPS35Q96QK1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.03■□□□□ 0.48
VPS35Q96QK1 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS35Q96QK1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS35Q96QK1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS35Q96QK1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 AC005332.3-201ENST00000589904 676 ntBASIC18.02■□□□□ 0.48
VPS35Q96QK1 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS35Q96QK1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms