Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC236430.1-201ENST00000402231 743 ntBASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC024563.2-201ENST00000603282 481 ntBASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AL356309.3-201ENST00000624132 1934 ntBASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.34■□□□□ 0.37
CNTNAP3BQ96NU0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 AC073314.1-201ENST00000568729 2216 ntBASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CNTNAP3BQ96NU0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 AFG3L1P-217ENST00000557444 2447 ntBASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CNTNAP3BQ96NU0 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.32■□□□□ 0.36
CNTNAP3BQ96NU0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 INGX-202ENST00000489074 768 ntBASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 AC104390.1-201ENST00000555663 520 ntBASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 AC107918.4-202ENST00000641623 219 ntBASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CNTNAP3BQ96NU0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms