Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC42Q96M95 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC42Q96M95 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC42Q96M95 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CCDC42Q96M95 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC42Q96M95 AC006116.8-202ENST00000587620 1550 ntBASIC19.64■□□□□ 0.73
CCDC42Q96M95 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC42Q96M95 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC42Q96M95 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC42Q96M95 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC42Q96M95 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC42Q96M95 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC42Q96M95 AC012313.1-201ENST00000593393 3059 ntBASIC19.62■□□□□ 0.73
CCDC42Q96M95 SIRPAP1-201ENST00000448467 1770 ntBASIC19.62■□□□□ 0.73
CCDC42Q96M95 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 NUDT16P1-203ENST00000513809 620 ntBASIC19.62■□□□□ 0.73
CCDC42Q96M95 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC42Q96M95 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC42Q96M95 AC093010.1-201ENST00000473625 1624 ntBASIC19.62■□□□□ 0.73
CCDC42Q96M95 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 KRT18P55-202ENST00000578578 1546 ntBASIC19.61■□□□□ 0.73
CCDC42Q96M95 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 HOXB1-202ENST00000577092 1414 ntBASIC19.61■□□□□ 0.73
CCDC42Q96M95 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 MIR4674-201ENST00000582457 87 ntBASIC19.61■□□□□ 0.73
CCDC42Q96M95 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC42Q96M95 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC42Q96M95 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms