Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1AQ8TE12 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1AQ8TE12 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 AC009533.2-201ENST00000543664 586 ntBASIC17.67■□□□□ 0.42
LMX1AQ8TE12 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 AC008608.2-201ENST00000606089 416 ntBASIC17.67■□□□□ 0.42
LMX1AQ8TE12 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1AQ8TE12 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 AC120114.3-201ENST00000611923 658 ntBASIC17.66■□□□□ 0.42
LMX1AQ8TE12 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1AQ8TE12 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms