Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TMEM184B-212ENST00000633056 4792 nt15.99■□□□□ 0.152e-8■□□□□ 10.1
DDX55Q8NHQ9 BOD1-205ENST00000477985 850 ntTSL 215.32■□□□□ 0.042e-8■□□□□ 10.1
DDX55Q8NHQ9 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.022e-8■□□□□ 10.1
DDX55Q8NHQ9 TMEM184B-205ENST00000436674 3667 ntTSL 1 (best)14.33□□□□□ -0.122e-8■□□□□ 10.1
DDX55Q8NHQ9 TMEM184B-201ENST00000361684 3593 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.272e-8■□□□□ 10.1
DDX55Q8NHQ9 NAV2-201ENST00000349880 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.432e-8■□□□□ 10.1
DDX55Q8NHQ9 NAV2-208ENST00000527559 11171 ntTSL 5 BASIC11.72□□□□□ -0.532e-8■□□□□ 10.1
DDX55Q8NHQ9 LGALS1-206ENST00000480207 185 ntTSL 510.23□□□□□ -0.772e-8■□□□□ 10.1
DDX55Q8NHQ9 BOD1-207ENST00000518658 736 ntTSL 210.22□□□□□ -0.772e-8■□□□□ 10.1
DDX55Q8NHQ9 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC9.61□□□□□ -0.872e-8■□□□□ 10.1
DDX55Q8NHQ9 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC9.29□□□□□ -0.922e-8■□□□□ 10.1
DDX55Q8NHQ9 PRDX3-203ENST00000494433 2277 ntTSL 1 (best)9.2□□□□□ -0.942e-8■□□□□ 10.1
DDX55Q8NHQ9 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.032e-8■□□□□ 10.1
DDX55Q8NHQ9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.333e-18■□□□□ 10.1
DDX55Q8NHQ9 RNF149-202ENST00000424632 2010 ntTSL 222.52■■□□□ 1.193e-18■□□□□ 10.1
DDX55Q8NHQ9 WDR82-204ENST00000487402 4333 ntTSL 210.83□□□□□ -0.683e-7■□□□□ 10.1
DDX55Q8NHQ9 IDH3B-208ENST00000479376 436 ntTSL 213.34□□□□□ -0.273e-6■□□□□ 10.1
DDX55Q8NHQ9 SEMA4G-205ENST00000517724 2675 ntTSL 1 (best) BASIC12.04□□□□□ -0.481e-6■□□□□ 10.1
DDX55Q8NHQ9 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.471e-10■□□□□ 10.1
DDX55Q8NHQ9 SLC7A5-203ENST00000565644 3983 ntTSL 1 (best) BASIC11.78□□□□□ -0.521e-10■□□□□ 10.1
DDX55Q8NHQ9 DCTN1-205ENST00000409567 4024 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.745e-6■□□□□ 10.1
DDX55Q8NHQ9 H3F3B-203ENST00000586518 1701 nt33.21■■■□□ 2.915e-10■□□□□ 10.1
DDX55Q8NHQ9 H3F3B-213ENST00000593254 894 ntTSL 516.41■□□□□ 0.225e-10■□□□□ 10.1
DDX55Q8NHQ9 H3F3B-212ENST00000592643 795 ntTSL 3 BASIC14.4□□□□□ -0.15e-10■□□□□ 10.1
DDX55Q8NHQ9 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.25e-10■□□□□ 10.1
DDX55Q8NHQ9 SNRPG-208ENST00000482975 1093 ntTSL 1 (best) BASIC12.82□□□□□ -0.367e-12■□□□□ 10.1
DDX55Q8NHQ9 SNRPG-204ENST00000438261 515 ntTSL 2 BASIC12.68□□□□□ -0.387e-12■□□□□ 10.1
DDX55Q8NHQ9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.45□□□□□ -1.867e-12■□□□□ 10.1
DDX55Q8NHQ9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.45□□□□□ -1.867e-12■□□□□ 10.1
DDX55Q8NHQ9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.882e-8■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-207ENST00000458653 596 ntTSL 234.47■■■■□ 3.111e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-202ENST00000371743 1008 ntTSL 1 (best)31.11■■■□□ 2.571e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-203ENST00000417721 860 ntTSL 1 (best)30.22■■■□□ 2.431e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-205ENST00000441722 946 ntTSL 1 (best)26.24■■□□□ 1.791e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC26.24■■□□□ 1.791e-22■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-207ENST00000563578 1494 ntTSL 324.88■■□□□ 1.576e-11■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.12■■□□□ 1.296e-11■□□□□ 10.1
DDX55Q8NHQ9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.256e-11■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-213ENST00000568202 1843 ntTSL 522.35■■□□□ 1.176e-11■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-206ENST00000562746 2260 ntTSL 222.1■■□□□ 1.136e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.646e-11■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.626e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.466e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-208ENST00000559642 505 ntTSL 315.78■□□□□ 0.126e-11■□□□□ 10.1
DDX55Q8NHQ9 TACC3-210ENST00000485989 726 ntTSL 315.66■□□□□ 0.16e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-205ENST00000558984 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.076e-11■□□□□ 10.1
DDX55Q8NHQ9 TACC3-209ENST00000484651 2715 ntTSL 214.56□□□□□ -0.086e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-204ENST00000558961 495 ntTSL 313.82□□□□□ -0.26e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-207ENST00000559501 1112 ntTSL 213.82□□□□□ -0.26e-11■□□□□ 10.1
DDX55Q8NHQ9 BMP4-202ENST00000417573 1784 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.266e-11■□□□□ 10.1
DDX55Q8NHQ9 TSPAN6-201ENST00000373020 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.286e-11■□□□□ 10.1
DDX55Q8NHQ9 NAGPA-208ENST00000564397 3286 ntTSL 213.04□□□□□ -0.326e-11■□□□□ 10.1
DDX55Q8NHQ9 TACC3-206ENST00000470136 650 ntTSL 312.57□□□□□ -0.46e-11■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-209ENST00000620594 508 ntTSL 39.66□□□□□ -0.861e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)9.25□□□□□ -0.931e-22■□□□□ 10.1
DDX55Q8NHQ9 ZFAS1-204ENST00000428008 566 ntTSL 29.25□□□□□ -0.931e-22■□□□□ 10.1
DDX55Q8NHQ9 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.48□□□□□ -1.376e-11■□□□□ 10.1
DDX55Q8NHQ9 DMPK-215ENST00000598272 1410 nt31.11■■■□□ 2.571e-7■□□□□ 10.1
DDX55Q8NHQ9 SLC4A2-218ENST00000494125 782 ntTSL 229.88■■■□□ 2.371e-15■□□□□ 10.1
DDX55Q8NHQ9 CSNK1G2-206ENST00000589861 756 ntTSL 528.86■■■□□ 2.211e-15■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-207ENST00000475680 1138 ntTSL 526.74■■□□□ 1.875e-23■□□□□ 10.1
DDX55Q8NHQ9 MINOS1-208ENST00000498067 481 ntTSL 226.37■■□□□ 1.811e-15■□□□□ 10.1
DDX55Q8NHQ9 CSNK1G2-211ENST00000615564 964 ntTSL 523.44■■□□□ 1.341e-15■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.155e-23■□□□□ 10.1
DDX55Q8NHQ9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.143e-8■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.7■■□□□ 1.065e-23■□□□□ 10.1
DDX55Q8NHQ9 PSMD4-205ENST00000445776 703 ntTSL 321.62■■□□□ 1.054e-7■□□□□ 10.1
DDX55Q8NHQ9 PSMD4-203ENST00000427779 649 ntTSL 321.37■■□□□ 1.014e-7■□□□□ 10.1
DDX55Q8NHQ9 FAM120A-203ENST00000427765 1710 ntTSL 1 (best)20.86■□□□□ 0.933e-8■□□□□ 10.1
DDX55Q8NHQ9 SLC4A2-213ENST00000483786 571 ntTSL 420.31■□□□□ 0.841e-15■□□□□ 10.1
DDX55Q8NHQ9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.23■□□□□ 0.834e-7■□□□□ 10.1
DDX55Q8NHQ9 MINOS1-204ENST00000479642 576 ntTSL 319.87■□□□□ 0.771e-15■□□□□ 10.1
DDX55Q8NHQ9 SLC4A2-206ENST00000466368 548 ntTSL 419.01■□□□□ 0.631e-15■□□□□ 10.1
DDX55Q8NHQ9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.42■□□□□ 0.543e-8■□□□□ 10.1
DDX55Q8NHQ9 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.67■□□□□ 0.423e-8■□□□□ 10.1
DDX55Q8NHQ9 TCOF1-215ENST00000515516 661 ntTSL 516.86■□□□□ 0.293e-8■□□□□ 10.1
DDX55Q8NHQ9 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.033e-8■□□□□ 10.1
DDX55Q8NHQ9 PET100-206ENST00000601829 317 ntTSL 214.84□□□□□ -0.031e-15■□□□□ 10.1
DDX55Q8NHQ9 PSMD4-202ENST00000368884 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.084e-7■□□□□ 10.1
DDX55Q8NHQ9 LAMTOR1-205ENST00000539797 535 ntTSL 514.48□□□□□ -0.093e-8■□□□□ 10.1
DDX55Q8NHQ9 SEPT8-213ENST00000481030 790 ntTSL 314.46□□□□□ -0.093e-8■□□□□ 10.1
DDX55Q8NHQ9 NCDN-204ENST00000423723 986 ntTSL 314.2□□□□□ -0.143e-8■□□□□ 10.1
DDX55Q8NHQ9 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC13.99□□□□□ -0.173e-8■□□□□ 10.1
DDX55Q8NHQ9 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.193e-8■□□□□ 10.1
DDX55Q8NHQ9 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.23e-8■□□□□ 10.1
DDX55Q8NHQ9 PET100-205ENST00000601406 332 ntTSL 2 BASIC13.19□□□□□ -0.31e-15■□□□□ 10.1
DDX55Q8NHQ9 TCOF1-205ENST00000439160 4644 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.363e-8■□□□□ 10.1
DDX55Q8NHQ9 NCDN-202ENST00000373243 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.393e-8■□□□□ 10.1
DDX55Q8NHQ9 TCOF1-211ENST00000513346 4646 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.433e-8■□□□□ 10.1
DDX55Q8NHQ9 TCOF1-204ENST00000427724 4272 ntAPPRIS ALT2 TSL 511.41□□□□□ -0.583e-8■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-203ENST00000424381 1224 ntTSL 2 BASIC11.05□□□□□ -0.645e-23■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-211ENST00000521440 746 ntTSL 1 (best)7.83□□□□□ -1.163e-8■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-215ENST00000522445 841 ntTSL 37.62□□□□□ -1.193e-8■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-205ENST00000452012 1166 ntTSL 37.48□□□□□ -1.215e-23■□□□□ 10.1
DDX55Q8NHQ9 UBE2E1-210ENST00000493707 857 ntTSL 37.43□□□□□ -1.225e-23■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.07□□□□□ -1.443e-8■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-209ENST00000519627 697 ntTSL 25.68□□□□□ -1.53e-8■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.683e-8■□□□□ 10.1
DDX55Q8NHQ9 EIF3E-212ENST00000521614 1990 ntTSL 23.47□□□□□ -1.853e-8■□□□□ 10.1
DDX55Q8NHQ9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.56■■□□□ 1.042e-82■□□□□ 10.1
Retrieved 100 of 15,504 protein–RNA pairs in 106.1 ms