Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 AC010240.3-201ENST00000607688 395 ntBASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 FAM87A-204ENST00000613235 858 ntBASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
CCDC40Q4G0X9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 HMGA1P5-201ENST00000412453 271 ntBASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 AC024243.1-201ENST00000609234 778 ntBASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC40Q4G0X9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC40Q4G0X9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC40Q4G0X9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.02■□□□□ 0.79
CCDC40Q4G0X9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 PCDHB18P-201ENST00000524813 2368 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 AC067852.2-201ENST00000590513 2313 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 LINC01568-207ENST00000641790 1380 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 AL512604.3-201ENST00000569583 964 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 MIR3180-4-201ENST00000582223 153 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 FLJ13224-201ENST00000313737 1514 ntBASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC40Q4G0X9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms