Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
H3F3AP84243 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
H3F3AP84243 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
H3F3AP84243 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
H3F3AP84243 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 KRT18P48-201ENST00000434763 852 ntBASIC16.25■□□□□ 0.19
H3F3AP84243 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.25■□□□□ 0.19
H3F3AP84243 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.25■□□□□ 0.19
H3F3AP84243 AC010331.1-201ENST00000611423 582 ntBASIC16.25■□□□□ 0.19
H3F3AP84243 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.25■□□□□ 0.19
H3F3AP84243 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
H3F3AP84243 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.25■□□□□ 0.19
H3F3AP84243 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
H3F3AP84243 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
H3F3AP84243 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.24■□□□□ 0.19
H3F3AP84243 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.24■□□□□ 0.19
H3F3AP84243 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 MIR1224-201ENST00000408193 85 ntBASIC16.24■□□□□ 0.19
H3F3AP84243 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.24■□□□□ 0.19
H3F3AP84243 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.24■□□□□ 0.19
H3F3AP84243 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.24■□□□□ 0.19
H3F3AP84243 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.24■□□□□ 0.19
H3F3AP84243 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.24■□□□□ 0.19
H3F3AP84243 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.24■□□□□ 0.19
H3F3AP84243 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
H3F3AP84243 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.24■□□□□ 0.19
H3F3AP84243 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
H3F3AP84243 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
H3F3AP84243 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 IGHGP-201ENST00000390555 1178 ntBASIC16.23■□□□□ 0.19
H3F3AP84243 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.23■□□□□ 0.19
H3F3AP84243 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 KRT18P35-201ENST00000510488 1269 ntBASIC16.23■□□□□ 0.19
H3F3AP84243 FAM86EP-206ENST00000510506 987 ntBASIC16.23■□□□□ 0.19
H3F3AP84243 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms