Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.45■□□□□ 0.22
SUMO3P55854 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.45■□□□□ 0.22
SUMO3P55854 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.45■□□□□ 0.22
SUMO3P55854 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SUMO3P55854 AC087388.1-201ENST00000571370 1112 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 AC004263.2-201ENST00000617183 678 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 AC009154.2-201ENST00000621177 724 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 AL353692.3-201ENST00000407031 1396 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.45■□□□□ 0.22
SUMO3P55854 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.45■□□□□ 0.22
SUMO3P55854 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.45■□□□□ 0.22
SUMO3P55854 AC132938.6-201ENST00000623828 1655 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 LINC00602-201ENST00000629776 2065 ntBASIC16.45■□□□□ 0.22
SUMO3P55854 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.45■□□□□ 0.22
SUMO3P55854 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.45■□□□□ 0.22
SUMO3P55854 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
SUMO3P55854 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.45■□□□□ 0.22
SUMO3P55854 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SUMO3P55854 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
SUMO3P55854 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 NEFHP1-201ENST00000412845 2629 ntBASIC16.44■□□□□ 0.22
SUMO3P55854 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SUMO3P55854 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 TSPY12P-201ENST00000421279 868 ntBASIC16.44■□□□□ 0.22
SUMO3P55854 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.44■□□□□ 0.22
SUMO3P55854 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.44■□□□□ 0.22
SUMO3P55854 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.44■□□□□ 0.22
SUMO3P55854 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.44■□□□□ 0.22
SUMO3P55854 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 AC005332.3-201ENST00000589904 676 ntBASIC16.44■□□□□ 0.22
SUMO3P55854 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.44■□□□□ 0.22
SUMO3P55854 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.44■□□□□ 0.22
SUMO3P55854 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SUMO3P55854 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SUMO3P55854 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.44■□□□□ 0.22
SUMO3P55854 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SUMO3P55854 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
SUMO3P55854 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SUMO3P55854 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
SUMO3P55854 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.43■□□□□ 0.22
SUMO3P55854 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.43■□□□□ 0.22
SUMO3P55854 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.43■□□□□ 0.22
SUMO3P55854 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.43■□□□□ 0.22
SUMO3P55854 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.43■□□□□ 0.22
SUMO3P55854 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SUMO3P55854 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.43■□□□□ 0.22
SUMO3P55854 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.43■□□□□ 0.22
SUMO3P55854 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.43■□□□□ 0.22
SUMO3P55854 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.43■□□□□ 0.22
SUMO3P55854 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms