Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.12■□□□□ 0.65
LIG3P49916 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LIG3P49916 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LIG3P49916 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.12■□□□□ 0.65
LIG3P49916 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.12■□□□□ 0.65
LIG3P49916 PRSS44-201ENST00000515154 1146 ntBASIC19.12■□□□□ 0.65
LIG3P49916 KRT18P21-201ENST00000515767 1272 ntBASIC19.12■□□□□ 0.65
LIG3P49916 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.12■□□□□ 0.65
LIG3P49916 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIG3P49916 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIG3P49916 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
LIG3P49916 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.11■□□□□ 0.65
LIG3P49916 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.11■□□□□ 0.65
LIG3P49916 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.11■□□□□ 0.65
LIG3P49916 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.11■□□□□ 0.65
LIG3P49916 INGX-201ENST00000359239 846 ntBASIC19.11■□□□□ 0.65
LIG3P49916 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
LIG3P49916 ECEL1P2-202ENST00000465689 757 ntBASIC19.11■□□□□ 0.65
LIG3P49916 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.11■□□□□ 0.65
LIG3P49916 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.11■□□□□ 0.65
LIG3P49916 AC005363.2-201ENST00000618631 242 ntBASIC19.11■□□□□ 0.65
LIG3P49916 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
LIG3P49916 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LIG3P49916 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.11■□□□□ 0.65
LIG3P49916 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIG3P49916 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 OR6D1P-202ENST00000641007 5290 ntBASIC19.1■□□□□ 0.65
LIG3P49916 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.1■□□□□ 0.65
LIG3P49916 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
LIG3P49916 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.1■□□□□ 0.65
LIG3P49916 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 SLC25A1P2-201ENST00000430693 912 ntBASIC19.1■□□□□ 0.65
LIG3P49916 FAM210CP-201ENST00000445714 574 ntBASIC19.1■□□□□ 0.65
LIG3P49916 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
LIG3P49916 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIG3P49916 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.1■□□□□ 0.65
LIG3P49916 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIG3P49916 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms