Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.04■□□□□ 0.48
CXCL12P48061 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.04■□□□□ 0.48
CXCL12P48061 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 BX005266.1-201ENST00000473402 457 ntBASIC18.04■□□□□ 0.48
CXCL12P48061 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 AC005829.1-201ENST00000570002 483 ntBASIC18.04■□□□□ 0.48
CXCL12P48061 AC006557.2-201ENST00000592985 1240 ntBASIC18.04■□□□□ 0.48
CXCL12P48061 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.04■□□□□ 0.48
CXCL12P48061 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CXCL12P48061 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.04■□□□□ 0.48
CXCL12P48061 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CXCL12P48061 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.03■□□□□ 0.48
CXCL12P48061 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 AC079776.2-201ENST00000641154 1609 ntBASIC18.03■□□□□ 0.48
CXCL12P48061 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CXCL12P48061 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.03■□□□□ 0.48
CXCL12P48061 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.03■□□□□ 0.48
CXCL12P48061 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 SNHG9-202ENST00000564014 471 ntBASIC18.03■□□□□ 0.48
CXCL12P48061 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.03■□□□□ 0.48
CXCL12P48061 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.03■□□□□ 0.48
CXCL12P48061 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CXCL12P48061 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CXCL12P48061 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 AC097374.2-201ENST00000618617 1306 ntBASIC18.02■□□□□ 0.48
CXCL12P48061 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 LINC01126-201ENST00000623515 1646 ntBASIC18.02■□□□□ 0.48
CXCL12P48061 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.02■□□□□ 0.48
CXCL12P48061 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL12P48061 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.02■□□□□ 0.48
CXCL12P48061 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL12P48061 MCCD1P2-201ENST00000423228 335 ntBASIC18.02■□□□□ 0.48
CXCL12P48061 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL12P48061 METTL21AP1-201ENST00000438852 635 ntBASIC18.02■□□□□ 0.48
CXCL12P48061 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.02■□□□□ 0.48
CXCL12P48061 AC108751.1-201ENST00000490852 363 ntBASIC18.02■□□□□ 0.48
CXCL12P48061 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.02■□□□□ 0.48
CXCL12P48061 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CXCL12P48061 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CXCL12P48061 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL12P48061 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.02■□□□□ 0.48
CXCL12P48061 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.02■□□□□ 0.48
CXCL12P48061 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CXCL12P48061 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.02■□□□□ 0.47
CXCL12P48061 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.02■□□□□ 0.47
CXCL12P48061 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CXCL12P48061 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.02■□□□□ 0.47
CXCL12P48061 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
CXCL12P48061 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CXCL12P48061 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.02■□□□□ 0.47
CXCL12P48061 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CXCL12P48061 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CXCL12P48061 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL12P48061 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL12P48061 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.01■□□□□ 0.47
CXCL12P48061 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CXCL12P48061 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.01■□□□□ 0.47
CXCL12P48061 AL158211.5-201ENST00000623583 2518 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms