Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.28■□□□□ 0.52
PTPN4P29074 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.28■□□□□ 0.52
PTPN4P29074 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PTPN4P29074 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 ECEL1P2-202ENST00000465689 757 ntBASIC18.28■□□□□ 0.52
PTPN4P29074 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
PTPN4P29074 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 AC010203.1-204ENST00000548782 407 ntBASIC18.28■□□□□ 0.52
PTPN4P29074 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.28■□□□□ 0.52
PTPN4P29074 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.28■□□□□ 0.52
PTPN4P29074 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PTPN4P29074 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.28■□□□□ 0.52
PTPN4P29074 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.28■□□□□ 0.52
PTPN4P29074 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTPN4P29074 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PTPN4P29074 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 KRT8P8-201ENST00000434750 1448 ntBASIC18.27■□□□□ 0.52
PTPN4P29074 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.27■□□□□ 0.52
PTPN4P29074 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.27■□□□□ 0.52
PTPN4P29074 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PTPN4P29074 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.27■□□□□ 0.52
PTPN4P29074 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.27■□□□□ 0.52
PTPN4P29074 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.27■□□□□ 0.52
PTPN4P29074 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTPN4P29074 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN4P29074 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN4P29074 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN4P29074 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
PTPN4P29074 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN4P29074 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.27■□□□□ 0.51
PTPN4P29074 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTPN4P29074 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PTPN4P29074 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.26■□□□□ 0.51
PTPN4P29074 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 AC108860.2-201ENST00000562760 2183 ntBASIC18.26■□□□□ 0.51
PTPN4P29074 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN4P29074 FAM207BP-201ENST00000447172 505 ntBASIC18.26■□□□□ 0.51
PTPN4P29074 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN4P29074 DUX4L26-201ENST00000489078 1255 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms