Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFX1P22670 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RFX1P22670 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX1P22670 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RFX1P22670 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.81■□□□□ 0.76
RFX1P22670 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RFX1P22670 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 BCL2-203ENST00000589955 5011 ntBASIC19.8■□□□□ 0.76
RFX1P22670 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.8■□□□□ 0.76
RFX1P22670 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 KRT18P38-201ENST00000449496 1282 ntBASIC19.8■□□□□ 0.76
RFX1P22670 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 AC104390.1-201ENST00000555663 520 ntBASIC19.8■□□□□ 0.76
RFX1P22670 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.8■□□□□ 0.76
RFX1P22670 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 AC112497.1-201ENST00000624824 639 ntBASIC19.8■□□□□ 0.76
RFX1P22670 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RFX1P22670 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
RFX1P22670 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RFX1P22670 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.79■□□□□ 0.76
RFX1P22670 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX1P22670 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.79■□□□□ 0.76
RFX1P22670 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX1P22670 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX1P22670 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.79■□□□□ 0.76
RFX1P22670 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.79■□□□□ 0.76
RFX1P22670 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.79■□□□□ 0.76
RFX1P22670 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.79■□□□□ 0.76
RFX1P22670 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.79■□□□□ 0.76
RFX1P22670 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.79■□□□□ 0.76
RFX1P22670 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 AC020763.4-201ENST00000623414 4170 ntBASIC19.79■□□□□ 0.76
RFX1P22670 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RFX1P22670 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.79■□□□□ 0.76
RFX1P22670 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
RFX1P22670 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 FLJ13224-201ENST00000313737 1514 ntBASIC19.78■□□□□ 0.76
RFX1P22670 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.78■□□□□ 0.76
RFX1P22670 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RFX1P22670 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.78■□□□□ 0.76
RFX1P22670 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.78■□□□□ 0.76
RFX1P22670 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.78■□□□□ 0.76
RFX1P22670 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RFX1P22670 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
RFX1P22670 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
RFX1P22670 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms