Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH3P20585 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
MSH3P20585 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.11■□□□□ 0.49
MSH3P20585 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
MSH3P20585 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 HBZP1-201ENST00000354915 429 ntBASIC18.11■□□□□ 0.49
MSH3P20585 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.11■□□□□ 0.49
MSH3P20585 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.11■□□□□ 0.49
MSH3P20585 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MSH3P20585 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSH3P20585 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.11■□□□□ 0.49
MSH3P20585 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
MSH3P20585 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MSH3P20585 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH3P20585 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH3P20585 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH3P20585 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.1■□□□□ 0.49
MSH3P20585 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH3P20585 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH3P20585 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.1■□□□□ 0.49
MSH3P20585 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MSH3P20585 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.1■□□□□ 0.49
MSH3P20585 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
MSH3P20585 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSH3P20585 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
MSH3P20585 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.09■□□□□ 0.49
MSH3P20585 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
MSH3P20585 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.09■□□□□ 0.49
MSH3P20585 HLA-F-220ENST00000434407 884 ntBASIC18.09■□□□□ 0.49
MSH3P20585 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.09■□□□□ 0.49
MSH3P20585 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.09■□□□□ 0.49
MSH3P20585 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.09■□□□□ 0.49
MSH3P20585 AC008687.5-201ENST00000593746 558 ntBASIC18.09■□□□□ 0.49
MSH3P20585 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 HYMAI.1-201ENST00000620949 238 ntBASIC18.09■□□□□ 0.49
MSH3P20585 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms