Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RCC2P6-201ENST00000526625 1557 ntBASIC17.36■□□□□ 0.37
PDLIM1O00151 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PDLIM1O00151 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.36■□□□□ 0.37
PDLIM1O00151 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.35■□□□□ 0.37
PDLIM1O00151 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 TUBB8P6-201ENST00000436895 1288 ntBASIC17.35■□□□□ 0.37
PDLIM1O00151 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.35■□□□□ 0.37
PDLIM1O00151 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.35■□□□□ 0.37
PDLIM1O00151 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
PDLIM1O00151 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.35■□□□□ 0.37
PDLIM1O00151 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.35■□□□□ 0.37
PDLIM1O00151 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 NBPF21P-201ENST00000425093 1451 ntBASIC17.35■□□□□ 0.37
PDLIM1O00151 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
PDLIM1O00151 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.35■□□□□ 0.37
PDLIM1O00151 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PDLIM1O00151 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.34■□□□□ 0.37
PDLIM1O00151 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.34■□□□□ 0.37
PDLIM1O00151 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.34■□□□□ 0.37
PDLIM1O00151 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PDLIM1O00151 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.34■□□□□ 0.37
PDLIM1O00151 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 FAM197Y4-202ENST00000622692 608 ntBASIC17.34■□□□□ 0.37
PDLIM1O00151 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.34■□□□□ 0.37
PDLIM1O00151 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PDLIM1O00151 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PDLIM1O00151 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.33■□□□□ 0.37
PDLIM1O00151 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
PDLIM1O00151 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
PDLIM1O00151 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.33■□□□□ 0.37
PDLIM1O00151 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.33■□□□□ 0.37
PDLIM1O00151 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PDLIM1O00151 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM1O00151 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
PDLIM1O00151 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.33■□□□□ 0.36
PDLIM1O00151 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM1O00151 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.33■□□□□ 0.36
PDLIM1O00151 AC066615.1-201ENST00000640911 628 ntBASIC17.33■□□□□ 0.36
PDLIM1O00151 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms