Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA4Q9Y5G9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA4Q9Y5G9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCDHGA4Q9Y5G9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 AC112907.2-201ENST00000448639 330 ntBASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHGA4Q9Y5G9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 GPAT2P1-201ENST00000444924 1672 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 RCC2P3-201ENST00000418112 1537 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 AL023284.2-201ENST00000405850 579 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 MIR4674-201ENST00000582457 87 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 AC083849.1-201ENST00000615227 514 ntBASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDHGA4Q9Y5G9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHGA4Q9Y5G9 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms