Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.69■□□□□ 0.58
SKA1Q96BD8 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.69■□□□□ 0.58
SKA1Q96BD8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SKA1Q96BD8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 TPM4P1-201ENST00000436100 807 ntBASIC18.68■□□□□ 0.58
SKA1Q96BD8 RASA4DP-201ENST00000460726 1199 ntBASIC18.68■□□□□ 0.58
SKA1Q96BD8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 AC083906.6-201ENST00000641366 219 ntBASIC18.68■□□□□ 0.58
SKA1Q96BD8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SKA1Q96BD8 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.68■□□□□ 0.58
SKA1Q96BD8 AC073592.3-201ENST00000625118 1834 ntBASIC18.67■□□□□ 0.58
SKA1Q96BD8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 MIR4674-201ENST00000582457 87 ntBASIC18.67■□□□□ 0.58
SKA1Q96BD8 HYMAI.1-201ENST00000620949 238 ntBASIC18.67■□□□□ 0.58
SKA1Q96BD8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA1Q96BD8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SKA1Q96BD8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 SPDYE15P-201ENST00000424157 909 ntBASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms