Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TP73-AS1-207ENST00000624167 988 ntBASIC22.31■■□□□ 1.16
USP48Q86UV5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
USP48Q86UV5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
USP48Q86UV5 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 WIZP1-201ENST00000531444 2299 ntBASIC22.31■■□□□ 1.16
USP48Q86UV5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC22.3■■□□□ 1.16
USP48Q86UV5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC22.3■■□□□ 1.16
USP48Q86UV5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 AC092183.1-201ENST00000469884 875 ntBASIC22.3■■□□□ 1.16
USP48Q86UV5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.3■■□□□ 1.16
USP48Q86UV5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC22.3■■□□□ 1.16
USP48Q86UV5 AC064862.7-201ENST00000604520 867 ntBASIC22.3■■□□□ 1.16
USP48Q86UV5 REXO1L6P-202ENST00000619970 1078 ntBASIC22.3■■□□□ 1.16
USP48Q86UV5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
USP48Q86UV5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
USP48Q86UV5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.3■■□□□ 1.16
USP48Q86UV5 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP48Q86UV5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.29■■□□□ 1.16
USP48Q86UV5 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
USP48Q86UV5 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC22.29■■□□□ 1.16
USP48Q86UV5 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.29■■□□□ 1.16
USP48Q86UV5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.29■■□□□ 1.16
USP48Q86UV5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
USP48Q86UV5 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.29■■□□□ 1.16
USP48Q86UV5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.29■■□□□ 1.16
USP48Q86UV5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP48Q86UV5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.28■■□□□ 1.16
USP48Q86UV5 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
USP48Q86UV5 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
USP48Q86UV5 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
USP48Q86UV5 SDHAP1-207ENST00000440850 2000 ntBASIC22.28■■□□□ 1.16
USP48Q86UV5 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC22.28■■□□□ 1.16
USP48Q86UV5 AC005332.8-201ENST00000622750 2735 ntBASIC22.28■■□□□ 1.16
USP48Q86UV5 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
USP48Q86UV5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
USP48Q86UV5 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
USP48Q86UV5 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC22.28■■□□□ 1.16
USP48Q86UV5 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC22.28■■□□□ 1.16
USP48Q86UV5 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC22.28■■□□□ 1.16
USP48Q86UV5 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.28■■□□□ 1.16
USP48Q86UV5 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.28■■□□□ 1.16
USP48Q86UV5 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC22.28■■□□□ 1.16
USP48Q86UV5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 AIRN-201ENST00000601203 4374 ntBASIC22.28■■□□□ 1.16
USP48Q86UV5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.28■■□□□ 1.16
USP48Q86UV5 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.28■■□□□ 1.16
USP48Q86UV5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
USP48Q86UV5 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 AC135050.7-201ENST00000624508 2218 ntBASIC22.27■■□□□ 1.16
USP48Q86UV5 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms