Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 AC034232.1-201ENST00000506026 1064 ntBASIC21.77■■□□□ 1.08
RNF20Q5VTR2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RNF20Q5VTR2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RNF20Q5VTR2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 AC113347.1-201ENST00000413321 391 ntBASIC21.76■■□□□ 1.07
RNF20Q5VTR2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 AC010203.1-204ENST00000548782 407 ntBASIC21.76■■□□□ 1.07
RNF20Q5VTR2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 AC140113.3-201ENST00000605663 199 ntBASIC21.76■■□□□ 1.07
RNF20Q5VTR2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 AC093010.1-201ENST00000473625 1624 ntBASIC21.76■■□□□ 1.07
RNF20Q5VTR2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RNF20Q5VTR2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 AL137013.1-201ENST00000432946 1228 ntBASIC21.75■■□□□ 1.07
RNF20Q5VTR2 PVRIG2P-201ENST00000435460 978 ntBASIC21.75■■□□□ 1.07
RNF20Q5VTR2 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 GCSHP2-201ENST00000560971 527 ntBASIC21.75■■□□□ 1.07
RNF20Q5VTR2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.75■■□□□ 1.07
RNF20Q5VTR2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RNF20Q5VTR2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 SLC25A6P5-201ENST00000435663 894 ntBASIC21.74■■□□□ 1.07
RNF20Q5VTR2 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 COX11P1-201ENST00000489116 835 ntBASIC21.74■■□□□ 1.07
RNF20Q5VTR2 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 AL157888.1-201ENST00000631930 593 ntBASIC21.74■■□□□ 1.07
RNF20Q5VTR2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RNF20Q5VTR2 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms