Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC88AQ3V6T2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.15
CCDC88AQ3V6T2 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC88AQ3V6T2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
CCDC88AQ3V6T2 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.2■■□□□ 1.14
CCDC88AQ3V6T2 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC88AQ3V6T2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 AC105339.3-201ENST00000560043 636 ntBASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 AC011467.4-201ENST00000594891 528 ntBASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 AC107918.4-202ENST00000641623 219 ntBASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC88AQ3V6T2 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 AC083906.6-201ENST00000641366 219 ntBASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MIR149-201ENST00000384879 89 ntBASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MCCD1P2-201ENST00000423228 335 ntBASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC88AQ3V6T2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC88AQ3V6T2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms