Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.06■□□□□ 0.96
SF3A1Q15459 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.06■□□□□ 0.96
SF3A1Q15459 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SF3A1Q15459 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.06■□□□□ 0.96
SF3A1Q15459 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.06■□□□□ 0.96
SF3A1Q15459 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SF3A1Q15459 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SF3A1Q15459 AC138028.4-201ENST00000564984 1845 ntBASIC21.06■□□□□ 0.96
SF3A1Q15459 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SF3A1Q15459 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
SF3A1Q15459 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SF3A1Q15459 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 INGX-201ENST00000359239 846 ntBASIC21.05■□□□□ 0.96
SF3A1Q15459 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SF3A1Q15459 WWOX-216ENST00000569818 525 ntBASIC21.05■□□□□ 0.96
SF3A1Q15459 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.05■□□□□ 0.96
SF3A1Q15459 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
SF3A1Q15459 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
SF3A1Q15459 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SF3A1Q15459 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SF3A1Q15459 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.05■□□□□ 0.96
SF3A1Q15459 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.05■□□□□ 0.96
SF3A1Q15459 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SF3A1Q15459 FZD10-202ENST00000539839 3282 ntBASIC21.05■□□□□ 0.96
SF3A1Q15459 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SF3A1Q15459 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 KRT8P9-201ENST00000558927 1449 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 AL163051.1-201ENST00000569214 1512 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
SF3A1Q15459 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SF3A1Q15459 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 BX088651.1-201ENST00000540551 451 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 AC116562.4-202ENST00000641738 218 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 CYP2D8P-201ENST00000433633 1490 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 SDHAP2-201ENST00000455183 2001 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SF3A1Q15459 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.04■□□□□ 0.96
SF3A1Q15459 HOXB1-202ENST00000577092 1414 ntBASIC21.04■□□□□ 0.96
SF3A1Q15459 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SF3A1Q15459 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SF3A1Q15459 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.03■□□□□ 0.96
SF3A1Q15459 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.03■□□□□ 0.96
SF3A1Q15459 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.03■□□□□ 0.96
SF3A1Q15459 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
SF3A1Q15459 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.03■□□□□ 0.96
SF3A1Q15459 KRT18P23-201ENST00000435622 1283 ntBASIC21.03■□□□□ 0.96
SF3A1Q15459 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 C2orf69P3-201ENST00000565542 1120 ntBASIC21.03■□□□□ 0.96
SF3A1Q15459 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
SF3A1Q15459 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.03■□□□□ 0.96
SF3A1Q15459 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SF3A1Q15459 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms