Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 KRT18P38-201ENST00000449496 1282 ntBASIC19.04■□□□□ 0.64
HDAC4P56524 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.04■□□□□ 0.64
HDAC4P56524 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.04■□□□□ 0.64
HDAC4P56524 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 AL096828.2-201ENST00000567259 1965 ntBASIC19.04■□□□□ 0.64
HDAC4P56524 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.04■□□□□ 0.64
HDAC4P56524 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
HDAC4P56524 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
HDAC4P56524 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 TMPOP1-202ENST00000424642 1267 ntBASIC19.03■□□□□ 0.64
HDAC4P56524 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
HDAC4P56524 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
HDAC4P56524 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
HDAC4P56524 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.03■□□□□ 0.64
HDAC4P56524 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.03■□□□□ 0.64
HDAC4P56524 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDAC4P56524 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
HDAC4P56524 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 REXO1L9P-201ENST00000604264 2108 ntBASIC19.02■□□□□ 0.64
HDAC4P56524 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HDAC4P56524 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDAC4P56524 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.02■□□□□ 0.64
HDAC4P56524 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HDAC4P56524 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HDAC4P56524 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HDAC4P56524 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 AC092597.1-201ENST00000487352 616 ntBASIC19.01■□□□□ 0.63
HDAC4P56524 AC063952.2-201ENST00000498792 1227 ntBASIC19.01■□□□□ 0.63
HDAC4P56524 KRT18P21-201ENST00000515767 1272 ntBASIC19.01■□□□□ 0.63
HDAC4P56524 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.01■□□□□ 0.63
HDAC4P56524 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HDAC4P56524 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.01■□□□□ 0.63
HDAC4P56524 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.01■□□□□ 0.63
HDAC4P56524 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.01■□□□□ 0.63
HDAC4P56524 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.01■□□□□ 0.63
HDAC4P56524 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDAC4P56524 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 AL391807.1-203ENST00000604392 2365 ntBASIC19■□□□□ 0.63
HDAC4P56524 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19■□□□□ 0.63
HDAC4P56524 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HDAC4P56524 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms