Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 HTR5BP-201ENST00000430851 1154 ntBASIC17.98■□□□□ 0.47
LIMK1P53667 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMK1P53667 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMK1P53667 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
LIMK1P53667 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMK1P53667 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMK1P53667 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
LIMK1P53667 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LIMK1P53667 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
LIMK1P53667 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMK1P53667 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.97■□□□□ 0.47
LIMK1P53667 AC004832.2-201ENST00000426397 482 ntBASIC17.97■□□□□ 0.47
LIMK1P53667 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.97■□□□□ 0.47
LIMK1P53667 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMK1P53667 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.97■□□□□ 0.47
LIMK1P53667 Z83851.2-201ENST00000609564 659 ntBASIC17.97■□□□□ 0.47
LIMK1P53667 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMK1P53667 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMK1P53667 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMK1P53667 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMK1P53667 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.96■□□□□ 0.47
LIMK1P53667 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.96■□□□□ 0.47
LIMK1P53667 RCC2P3-201ENST00000418112 1537 ntBASIC17.96■□□□□ 0.47
LIMK1P53667 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.96■□□□□ 0.47
LIMK1P53667 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMK1P53667 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
LIMK1P53667 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
LIMK1P53667 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.96■□□□□ 0.46
LIMK1P53667 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
LIMK1P53667 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.96■□□□□ 0.46
LIMK1P53667 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LIMK1P53667 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 AC008556.1-201ENST00000610908 2040 ntBASIC17.95■□□□□ 0.46
LIMK1P53667 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMK1P53667 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMK1P53667 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.95■□□□□ 0.46
LIMK1P53667 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMK1P53667 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
LIMK1P53667 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.95■□□□□ 0.46
LIMK1P53667 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms