Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 AC020916.1-201ENST00000587762 1774 ntBASIC17.14■□□□□ 0.33
RFX3P48380 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.14■□□□□ 0.33
RFX3P48380 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RFX3P48380 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
RFX3P48380 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
RFX3P48380 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
RFX3P48380 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
RFX3P48380 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.13■□□□□ 0.33
RFX3P48380 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.13■□□□□ 0.33
RFX3P48380 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.13■□□□□ 0.33
RFX3P48380 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 SLC25A3P1-201ENST00000443844 931 ntBASIC17.13■□□□□ 0.33
RFX3P48380 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
RFX3P48380 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
RFX3P48380 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.13■□□□□ 0.33
RFX3P48380 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RFX3P48380 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
RFX3P48380 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.13■□□□□ 0.33
RFX3P48380 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RFX3P48380 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 AC211429.1-201ENST00000415277 523 ntBASIC17.12■□□□□ 0.33
RFX3P48380 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.12■□□□□ 0.33
RFX3P48380 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.12■□□□□ 0.33
RFX3P48380 WWOX-216ENST00000569818 525 ntBASIC17.12■□□□□ 0.33
RFX3P48380 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 AC112497.1-201ENST00000624824 639 ntBASIC17.12■□□□□ 0.33
RFX3P48380 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RFX3P48380 AC073592.3-201ENST00000625118 1834 ntBASIC17.12■□□□□ 0.33
RFX3P48380 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFX3P48380 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.12■□□□□ 0.33
RFX3P48380 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.11■□□□□ 0.33
RFX3P48380 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFX3P48380 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms