Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC22.05■■□□□ 1.12
BRCA1P38398 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC22.05■■□□□ 1.12
BRCA1P38398 SPDYE21P-201ENST00000413323 827 ntBASIC22.05■■□□□ 1.12
BRCA1P38398 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC22.05■■□□□ 1.12
BRCA1P38398 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC22.05■■□□□ 1.12
BRCA1P38398 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.05■■□□□ 1.12
BRCA1P38398 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC22.05■■□□□ 1.12
BRCA1P38398 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
BRCA1P38398 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC22.05■■□□□ 1.12
BRCA1P38398 Z92544.3-201ENST00000624747 417 ntBASIC22.05■■□□□ 1.12
BRCA1P38398 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
BRCA1P38398 KRT8P47-201ENST00000604727 1398 ntBASIC22.04■■□□□ 1.12
BRCA1P38398 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.04■■□□□ 1.12
BRCA1P38398 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
BRCA1P38398 COPE-202ENST00000349893 948 ntTSL 2 BASIC22.04■■□□□ 1.12
BRCA1P38398 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
BRCA1P38398 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC22.04■■□□□ 1.12
BRCA1P38398 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC22.04■■□□□ 1.12
BRCA1P38398 COX5A-202ENST00000562233 441 ntTSL 3 BASIC22.04■■□□□ 1.12
BRCA1P38398 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC22.04■■□□□ 1.12
BRCA1P38398 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.04■■□□□ 1.12
BRCA1P38398 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
BRCA1P38398 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BRCA1P38398 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
BRCA1P38398 AC023141.5-201ENST00000458585 616 ntBASIC22.03■■□□□ 1.12
BRCA1P38398 AC122714.2-201ENST00000502787 707 ntBASIC22.03■■□□□ 1.12
BRCA1P38398 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 KRT19P2-202ENST00000557173 1012 ntBASIC22.03■■□□□ 1.12
BRCA1P38398 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
BRCA1P38398 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC22.03■■□□□ 1.12
BRCA1P38398 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.03■■□□□ 1.12
BRCA1P38398 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BRCA1P38398 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC22.03■■□□□ 1.12
BRCA1P38398 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC22.03■■□□□ 1.12
BRCA1P38398 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC22.03■■□□□ 1.12
BRCA1P38398 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
BRCA1P38398 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
BRCA1P38398 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC22.02■■□□□ 1.12
BRCA1P38398 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
BRCA1P38398 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC22.02■■□□□ 1.12
BRCA1P38398 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC22.02■■□□□ 1.12
BRCA1P38398 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC22.02■■□□□ 1.12
BRCA1P38398 AC004706.3-202ENST00000621574 984 ntBASIC22.02■■□□□ 1.12
BRCA1P38398 AL035252.4-201ENST00000624174 288 ntBASIC22.02■■□□□ 1.12
BRCA1P38398 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC22.02■■□□□ 1.12
BRCA1P38398 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
BRCA1P38398 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.02■■□□□ 1.12
BRCA1P38398 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
BRCA1P38398 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.02■■□□□ 1.11
BRCA1P38398 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
BRCA1P38398 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
BRCA1P38398 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC22.01■■□□□ 1.11
BRCA1P38398 AL589182.2-201ENST00000619332 1049 ntBASIC22.01■■□□□ 1.11
BRCA1P38398 AL805961.1-202ENST00000641562 540 ntBASIC22.01■■□□□ 1.11
BRCA1P38398 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.01■■□□□ 1.11
BRCA1P38398 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.01■■□□□ 1.11
BRCA1P38398 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
BRCA1P38398 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.01■■□□□ 1.11
BRCA1P38398 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.01■■□□□ 1.11
BRCA1P38398 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRCA1P38398 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.01■■□□□ 1.11
BRCA1P38398 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC22■■□□□ 1.11
BRCA1P38398 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22■■□□□ 1.11
BRCA1P38398 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC22■■□□□ 1.11
BRCA1P38398 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms