Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.17■□□□□ 0.66
BDNFP23560 PRELID1P1-202ENST00000567272 903 ntBASIC19.17■□□□□ 0.66
BDNFP23560 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.17■□□□□ 0.66
BDNFP23560 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.17■□□□□ 0.66
BDNFP23560 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.17■□□□□ 0.66
BDNFP23560 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.17■□□□□ 0.66
BDNFP23560 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.16■□□□□ 0.66
BDNFP23560 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.16■□□□□ 0.66
BDNFP23560 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
BDNFP23560 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.16■□□□□ 0.66
BDNFP23560 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.16■□□□□ 0.66
BDNFP23560 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.16■□□□□ 0.66
BDNFP23560 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.16■□□□□ 0.66
BDNFP23560 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.16■□□□□ 0.66
BDNFP23560 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
BDNFP23560 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
BDNFP23560 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.16■□□□□ 0.66
BDNFP23560 LINC00167-201ENST00000530583 1419 ntBASIC19.16■□□□□ 0.66
BDNFP23560 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
BDNFP23560 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.15■□□□□ 0.66
BDNFP23560 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 AL845331.1-201ENST00000424978 1190 ntBASIC19.15■□□□□ 0.66
BDNFP23560 AC091607.1-201ENST00000490318 1060 ntBASIC19.15■□□□□ 0.66
BDNFP23560 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
BDNFP23560 AC012615.1-201ENST00000565797 1299 ntBASIC19.15■□□□□ 0.66
BDNFP23560 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.15■□□□□ 0.66
BDNFP23560 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.15■□□□□ 0.66
BDNFP23560 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
BDNFP23560 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
BDNFP23560 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
BDNFP23560 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
BDNFP23560 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
BDNFP23560 AL138781.2-201ENST00000617896 1843 ntBASIC19.14■□□□□ 0.65
BDNFP23560 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.14■□□□□ 0.65
BDNFP23560 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 AL450487.1-201ENST00000426799 995 ntBASIC19.14■□□□□ 0.65
BDNFP23560 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 AC074051.2-201ENST00000565115 352 ntBASIC19.14■□□□□ 0.65
BDNFP23560 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 AC011840.4-201ENST00000578471 627 ntBASIC19.14■□□□□ 0.65
BDNFP23560 AP005901.3-202ENST00000581653 237 ntBASIC19.14■□□□□ 0.65
BDNFP23560 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
BDNFP23560 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 Z69720.1-201ENST00000601483 472 ntBASIC19.14■□□□□ 0.65
BDNFP23560 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.14■□□□□ 0.65
BDNFP23560 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 AC020763.4-201ENST00000623414 4170 ntBASIC19.14■□□□□ 0.65
BDNFP23560 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.14■□□□□ 0.65
BDNFP23560 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
BDNFP23560 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms