Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.69■□□□□ 0.58
COL9A1P20849 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL9A1P20849 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.69■□□□□ 0.58
COL9A1P20849 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.69■□□□□ 0.58
COL9A1P20849 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 AC009947.1-201ENST00000444350 727 ntBASIC18.69■□□□□ 0.58
COL9A1P20849 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.69■□□□□ 0.58
COL9A1P20849 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL9A1P20849 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.69■□□□□ 0.58
COL9A1P20849 AC105339.3-201ENST00000560043 636 ntBASIC18.69■□□□□ 0.58
COL9A1P20849 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.69■□□□□ 0.58
COL9A1P20849 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.69■□□□□ 0.58
COL9A1P20849 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.69■□□□□ 0.58
COL9A1P20849 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.69■□□□□ 0.58
COL9A1P20849 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL9A1P20849 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.69■□□□□ 0.58
COL9A1P20849 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.68■□□□□ 0.58
COL9A1P20849 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.68■□□□□ 0.58
COL9A1P20849 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.68■□□□□ 0.58
COL9A1P20849 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.68■□□□□ 0.58
COL9A1P20849 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 IGHGP-201ENST00000390555 1178 ntBASIC18.68■□□□□ 0.58
COL9A1P20849 ATP5G2P4-201ENST00000442175 420 ntBASIC18.68■□□□□ 0.58
COL9A1P20849 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.68■□□□□ 0.58
COL9A1P20849 AC017007.3-201ENST00000479865 435 ntBASIC18.68■□□□□ 0.58
COL9A1P20849 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.68■□□□□ 0.58
COL9A1P20849 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.68■□□□□ 0.58
COL9A1P20849 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.68■□□□□ 0.58
COL9A1P20849 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.68■□□□□ 0.58
COL9A1P20849 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL9A1P20849 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.68■□□□□ 0.58
COL9A1P20849 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL9A1P20849 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL9A1P20849 AC002310.6-201ENST00000624451 1377 ntBASIC18.68■□□□□ 0.58
COL9A1P20849 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.67■□□□□ 0.58
COL9A1P20849 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 AP002414.1-201ENST00000391405 1147 ntBASIC18.67■□□□□ 0.58
COL9A1P20849 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.67■□□□□ 0.58
COL9A1P20849 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.67■□□□□ 0.58
COL9A1P20849 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.67■□□□□ 0.58
COL9A1P20849 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.67■□□□□ 0.58
COL9A1P20849 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.67■□□□□ 0.58
COL9A1P20849 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL9A1P20849 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.67■□□□□ 0.58
COL9A1P20849 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.66■□□□□ 0.58
COL9A1P20849 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
COL9A1P20849 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 MKNK2P1-201ENST00000437526 628 ntBASIC18.66■□□□□ 0.58
COL9A1P20849 AC002472.2-201ENST00000442739 958 ntBASIC18.66■□□□□ 0.58
COL9A1P20849 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL9A1P20849 INGX-202ENST00000489074 768 ntBASIC18.66■□□□□ 0.58
COL9A1P20849 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.66■□□□□ 0.58
COL9A1P20849 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.66■□□□□ 0.58
COL9A1P20849 MIR3180-4-201ENST00000582223 153 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms