Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HMGA1P17096 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 AP000347.1-202ENST00000435868 847 ntBASIC18.84■□□□□ 0.61
HMGA1P17096 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGA1P17096 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
HMGA1P17096 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.84■□□□□ 0.61
HMGA1P17096 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.84■□□□□ 0.61
HMGA1P17096 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.84■□□□□ 0.61
HMGA1P17096 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGA1P17096 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGA1P17096 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HMGA1P17096 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HMGA1P17096 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGA1P17096 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGA1P17096 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.83■□□□□ 0.61
HMGA1P17096 PHGDH-209ENST00000641074 1780 ntBASIC18.83■□□□□ 0.61
HMGA1P17096 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.83■□□□□ 0.61
HMGA1P17096 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGA1P17096 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.83■□□□□ 0.61
HMGA1P17096 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGA1P17096 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.83■□□□□ 0.61
HMGA1P17096 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGA1P17096 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGA1P17096 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGA1P17096 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGA1P17096 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.83■□□□□ 0.6
HMGA1P17096 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGA1P17096 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.83■□□□□ 0.6
HMGA1P17096 AL662844.1-201ENST00000546340 181 ntBASIC18.83■□□□□ 0.6
HMGA1P17096 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
HMGA1P17096 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
HMGA1P17096 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGA1P17096 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGA1P17096 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGA1P17096 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HMGA1P17096 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGA1P17096 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGA1P17096 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 HLA-A-201ENST00000376802 1334 ntBASIC18.82■□□□□ 0.6
HMGA1P17096 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
HMGA1P17096 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGA1P17096 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.82■□□□□ 0.6
HMGA1P17096 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGA1P17096 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGA1P17096 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGA1P17096 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HMGA1P17096 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGA1P17096 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.82■□□□□ 0.6
HMGA1P17096 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGA1P17096 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGA1P17096 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HMGA1P17096 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
HMGA1P17096 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 RNA5SP419-201ENST00000515908 135 ntBASIC18.81■□□□□ 0.6
HMGA1P17096 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HMGA1P17096 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGA1P17096 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.81■□□□□ 0.6
HMGA1P17096 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGA1P17096 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.81■□□□□ 0.6
HMGA1P17096 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGA1P17096 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms