Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.74■□□□□ 0.59
VCANP13611 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VCANP13611 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VCANP13611 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 U91328.1-201ENST00000437528 223 ntBASIC18.74■□□□□ 0.59
VCANP13611 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.74■□□□□ 0.59
VCANP13611 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.74■□□□□ 0.59
VCANP13611 SPDYE22P-201ENST00000582158 798 ntBASIC18.74■□□□□ 0.59
VCANP13611 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VCANP13611 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
VCANP13611 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VCANP13611 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.74■□□□□ 0.59
VCANP13611 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.74■□□□□ 0.59
VCANP13611 AC005593.1-201ENST00000624894 515 ntBASIC18.74■□□□□ 0.59
VCANP13611 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.74■□□□□ 0.59
VCANP13611 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VCANP13611 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
VCANP13611 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.73■□□□□ 0.59
VCANP13611 ACTG1P14-201ENST00000446382 1122 ntBASIC18.73■□□□□ 0.59
VCANP13611 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.73■□□□□ 0.59
VCANP13611 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.73■□□□□ 0.59
VCANP13611 AC073592.4-201ENST00000623827 446 ntBASIC18.73■□□□□ 0.59
VCANP13611 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.73■□□□□ 0.59
VCANP13611 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.73■□□□□ 0.59
VCANP13611 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.73■□□□□ 0.59
VCANP13611 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.73■□□□□ 0.59
VCANP13611 AC006504.4-201ENST00000592118 1568 ntBASIC18.73■□□□□ 0.59
VCANP13611 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.73■□□□□ 0.59
VCANP13611 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 AC004449.1-201ENST00000564240 433 ntBASIC18.73■□□□□ 0.59
VCANP13611 OR7E47P-204ENST00000575924 449 ntBASIC18.73■□□□□ 0.59
VCANP13611 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VCANP13611 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.73■□□□□ 0.59
VCANP13611 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.72■□□□□ 0.59
VCANP13611 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.72■□□□□ 0.59
VCANP13611 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.72■□□□□ 0.59
VCANP13611 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VCANP13611 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.72■□□□□ 0.59
VCANP13611 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VCANP13611 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.71■□□□□ 0.59
VCANP13611 AC005082.1-201ENST00000413042 2259 ntBASIC18.71■□□□□ 0.59
VCANP13611 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.71■□□□□ 0.59
VCANP13611 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.71■□□□□ 0.59
VCANP13611 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.71■□□□□ 0.59
VCANP13611 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
VCANP13611 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.71■□□□□ 0.59
VCANP13611 AC010336.2-201ENST00000564226 506 ntBASIC18.71■□□□□ 0.59
VCANP13611 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCANP13611 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.7■□□□□ 0.58
VCANP13611 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCANP13611 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.7■□□□□ 0.58
VCANP13611 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.7■□□□□ 0.58
VCANP13611 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.7■□□□□ 0.58
VCANP13611 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.7■□□□□ 0.58
VCANP13611 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms