Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 RHOQP3-201ENST00000437982 621 ntBASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC85CA6NKD9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 MIR1909-201ENST00000411312 80 ntBASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 FAM8A2P-201ENST00000528813 1142 ntBASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC85CA6NKD9 GUSBP5-202ENST00000510805 1989 ntBASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 AC073592.4-201ENST00000623827 446 ntBASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.04■□□□□ 0.8
CCDC85CA6NKD9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 HAUS4P1-201ENST00000406739 1145 ntBASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 MIR4525-201ENST00000580000 75 ntBASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 AC068137.2-201ENST00000605408 478 ntBASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 PMPCAP1-201ENST00000508114 1576 ntBASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC85CA6NKD9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 AC069335.1-201ENST00000489972 472 ntBASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 KRT8P32-201ENST00000512863 1461 ntBASIC20.02■□□□□ 0.8
CCDC85CA6NKD9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms