Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.13■□□□□ 0.17
VRK1Q99986 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VRK1Q99986 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK1Q99986 AC139713.2-201ENST00000641328 2723 ntBASIC16.12■□□□□ 0.17
VRK1Q99986 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK1Q99986 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK1Q99986 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK1Q99986 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.12■□□□□ 0.17
VRK1Q99986 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.12■□□□□ 0.17
VRK1Q99986 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.12■□□□□ 0.17
VRK1Q99986 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
VRK1Q99986 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
VRK1Q99986 Z98044.1-201ENST00000632503 1764 ntBASIC16.12■□□□□ 0.17
VRK1Q99986 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.12■□□□□ 0.17
VRK1Q99986 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
VRK1Q99986 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VRK1Q99986 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VRK1Q99986 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VRK1Q99986 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VRK1Q99986 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
VRK1Q99986 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 AP000523.1-201ENST00000398242 1049 ntBASIC16.11■□□□□ 0.17
VRK1Q99986 AC009947.2-201ENST00000444014 672 ntBASIC16.11■□□□□ 0.17
VRK1Q99986 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK1Q99986 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK1Q99986 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.11■□□□□ 0.17
VRK1Q99986 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.11■□□□□ 0.17
VRK1Q99986 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.11■□□□□ 0.17
VRK1Q99986 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
VRK1Q99986 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VRK1Q99986 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.1■□□□□ 0.17
VRK1Q99986 AC141586.3-201ENST00000562166 1838 ntBASIC16.1■□□□□ 0.17
VRK1Q99986 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.1■□□□□ 0.17
VRK1Q99986 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.1■□□□□ 0.17
VRK1Q99986 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.1■□□□□ 0.17
VRK1Q99986 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 AL359075.1-203ENST00000462729 1002 ntBASIC16.1■□□□□ 0.17
VRK1Q99986 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
VRK1Q99986 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
VRK1Q99986 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VRK1Q99986 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK1Q99986 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK1Q99986 AC011270.2-201ENST00000624293 2550 ntBASIC16.1■□□□□ 0.17
VRK1Q99986 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms