Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 AC024563.2-201ENST00000603282 481 ntBASIC21.17■□□□□ 0.98
TRERF1Q96PN7 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 AL691432.3-201ENST00000621860 400 ntBASIC21.17■□□□□ 0.98
TRERF1Q96PN7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRERF1Q96PN7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 GPR32P1-201ENST00000601788 811 ntBASIC21.16■□□□□ 0.98
TRERF1Q96PN7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 AC083906.6-201ENST00000641366 219 ntBASIC21.16■□□□□ 0.98
TRERF1Q96PN7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.16■□□□□ 0.98
TRERF1Q96PN7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 IGHGP-201ENST00000390555 1178 ntBASIC21.15■□□□□ 0.98
TRERF1Q96PN7 LINC00265-3P-201ENST00000447588 903 ntBASIC21.15■□□□□ 0.98
TRERF1Q96PN7 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 CIB2-208ENST00000560618 804 ntTSL 2 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21.15■□□□□ 0.98
TRERF1Q96PN7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 AL163051.1-201ENST00000569214 1512 ntBASIC21.14■□□□□ 0.98
TRERF1Q96PN7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRERF1Q96PN7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 AP000593.1-201ENST00000393668 712 ntBASIC21.14■□□□□ 0.97
TRERF1Q96PN7 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 AP000867.3-201ENST00000524675 377 ntBASIC21.14■□□□□ 0.97
TRERF1Q96PN7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 IGHV3-41-201ENST00000613121 348 ntBASIC21.14■□□□□ 0.97
TRERF1Q96PN7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
TRERF1Q96PN7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRERF1Q96PN7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRERF1Q96PN7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
TRERF1Q96PN7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms