Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 SPDYE15P-201ENST00000424157 909 ntBASIC20.23■□□□□ 0.83
HPS3Q969F9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.23■□□□□ 0.83
HPS3Q969F9 COX11P1-201ENST00000489116 835 ntBASIC20.23■□□□□ 0.83
HPS3Q969F9 YBX1P2-201ENST00000489612 999 ntBASIC20.23■□□□□ 0.83
HPS3Q969F9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.23■□□□□ 0.83
HPS3Q969F9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.23■□□□□ 0.83
HPS3Q969F9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.23■□□□□ 0.83
HPS3Q969F9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.23■□□□□ 0.83
HPS3Q969F9 MIR3180-4-201ENST00000582223 153 ntBASIC20.23■□□□□ 0.83
HPS3Q969F9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.23■□□□□ 0.83
HPS3Q969F9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HPS3Q969F9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
HPS3Q969F9 AC079602.3-201ENST00000623931 403 ntBASIC20.23■□□□□ 0.83
HPS3Q969F9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HPS3Q969F9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.23■□□□□ 0.83
HPS3Q969F9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.22■□□□□ 0.83
HPS3Q969F9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.22■□□□□ 0.83
HPS3Q969F9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
HPS3Q969F9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.22■□□□□ 0.83
HPS3Q969F9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HPS3Q969F9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
HPS3Q969F9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.22■□□□□ 0.83
HPS3Q969F9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
HPS3Q969F9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.22■□□□□ 0.83
HPS3Q969F9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.22■□□□□ 0.83
HPS3Q969F9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.22■□□□□ 0.83
HPS3Q969F9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.22■□□□□ 0.83
HPS3Q969F9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.22■□□□□ 0.83
HPS3Q969F9 AC140113.3-201ENST00000605663 199 ntBASIC20.22■□□□□ 0.83
HPS3Q969F9 AC092865.7-201ENST00000641832 219 ntBASIC20.22■□□□□ 0.83
HPS3Q969F9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HPS3Q969F9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 AC138028.4-201ENST00000564984 1845 ntBASIC20.22■□□□□ 0.83
HPS3Q969F9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.22■□□□□ 0.83
HPS3Q969F9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HPS3Q969F9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HPS3Q969F9 AC008764.6-201ENST00000595909 2069 ntBASIC20.22■□□□□ 0.83
HPS3Q969F9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HPS3Q969F9 FZD10-202ENST00000539839 3282 ntBASIC20.21■□□□□ 0.83
HPS3Q969F9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.21■□□□□ 0.83
HPS3Q969F9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 AP000523.1-201ENST00000398242 1049 ntBASIC20.21■□□□□ 0.83
HPS3Q969F9 RCN1P1-201ENST00000400413 996 ntBASIC20.21■□□□□ 0.83
HPS3Q969F9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.21■□□□□ 0.83
HPS3Q969F9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.21■□□□□ 0.83
HPS3Q969F9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.21■□□□□ 0.83
HPS3Q969F9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.21■□□□□ 0.83
HPS3Q969F9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HPS3Q969F9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HPS3Q969F9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.21■□□□□ 0.83
HPS3Q969F9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.2■□□□□ 0.83
HPS3Q969F9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HPS3Q969F9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HPS3Q969F9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HPS3Q969F9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HPS3Q969F9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HPS3Q969F9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.2■□□□□ 0.82
HPS3Q969F9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
HPS3Q969F9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HPS3Q969F9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
HPS3Q969F9 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.2■□□□□ 0.82
HPS3Q969F9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HPS3Q969F9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HPS3Q969F9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms