Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC12.76□□□□□ -0.373e-6■■■□□ 14.8
UPF1Q92900 SMG5-203ENST00000473643 541 ntTSL 212.63□□□□□ -0.393e-6■■■□□ 14.8
UPF1Q92900 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.43e-6■■■□□ 14.8
UPF1Q92900 IPP-202ENST00000396478 3113 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.423e-6■■■□□ 14.8
UPF1Q92900 FOXJ3-201ENST00000361346 5225 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.433e-7■■■□□ 14.8
UPF1Q92900 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.473e-6■■■□□ 14.8
UPF1Q92900 FOXJ3-202ENST00000361776 5106 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.473e-7■■■□□ 14.8
UPF1Q92900 WDR31-201ENST00000341761 4862 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.63e-6■■■□□ 14.8
UPF1Q92900 SIK2-201ENST00000304987 9678 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.623e-6■■■□□ 14.8
UPF1Q92900 KIF1B-205ENST00000377093 7565 ntTSL 1 (best) BASIC11.11□□□□□ -0.633e-6■■■□□ 14.8
UPF1Q92900 WDR31-202ENST00000374193 4878 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.73e-6■■■□□ 14.8
UPF1Q92900 XPR1-202ENST00000367590 8474 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.723e-6■■■□□ 14.8
UPF1Q92900 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC10.42□□□□□ -0.743e-6■■■□□ 14.8
UPF1Q92900 STAT6-221ENST00000556259 548 ntTSL 310.35□□□□□ -0.753e-6■■■□□ 14.8
UPF1Q92900 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.83e-6■■■□□ 14.8
UPF1Q92900 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.913e-6■■■□□ 14.8
UPF1Q92900 GPBP1L1-213ENST00000496278 1529 ntTSL 29.3□□□□□ -0.923e-6■■■□□ 14.8
UPF1Q92900 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC8.85□□□□□ -0.993e-6■■■□□ 14.8
UPF1Q92900 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC8.28□□□□□ -1.083e-6■■■□□ 14.8
UPF1Q92900 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC8.14□□□□□ -1.113e-7■■■□□ 14.8
UPF1Q92900 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.213e-7■■■□□ 14.8
UPF1Q92900 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.17□□□□□ -1.263e-7■■■□□ 14.8
UPF1Q92900 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.12□□□□□ -1.273e-7■■■□□ 14.8
UPF1Q92900 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.73□□□□□ -1.333e-6■■■□□ 14.8
UPF1Q92900 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.047e-7■■■□□ 14.8
UPF1Q92900 ZNF385A-215ENST00000552382 1516 ntTSL 326.71■■□□□ 1.875e-14■■■□□ 14.8
UPF1Q92900 RFLNA-203ENST00000389727 2385 ntAPPRIS P2 TSL 522.27■■□□□ 1.164e-8■■■□□ 14.8
UPF1Q92900 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.94e-8■■■□□ 14.8
UPF1Q92900 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.884e-8■■■□□ 14.8
UPF1Q92900 RFLNA-204ENST00000545615 449 ntTSL 315.89■□□□□ 0.134e-8■■■□□ 14.8
UPF1Q92900 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.054e-8■■■□□ 14.8
UPF1Q92900 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.054e-8■■■□□ 14.8
UPF1Q92900 ZNF664-201ENST00000337815 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.574e-8■■■□□ 14.8
UPF1Q92900 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.343e-8■■■□□ 14.8
UPF1Q92900 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.99■■□□□ 1.753e-15■■■□□ 14.8
UPF1Q92900 OAZ1-201ENST00000581150 1131 ntTSL 524.95■■□□□ 1.583e-26■■■□□ 14.8
UPF1Q92900 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.583e-15■■■□□ 14.8
UPF1Q92900 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.53■■□□□ 1.363e-15■■■□□ 14.8
UPF1Q92900 OAZ1-203ENST00000586054 2832 nt23.18■■□□□ 1.33e-15■■■□□ 14.8
UPF1Q92900 OAZ1-207ENST00000590943 1012 ntTSL 221.82■■□□□ 1.083e-15■■■□□ 14.8
UPF1Q92900 OAZ1-208ENST00000592727 726 ntTSL 221.59■■□□□ 1.053e-15■■■□□ 14.8
UPF1Q92900 OAZ1-210ENST00000593012 1357 ntTSL 221.14■□□□□ 0.983e-15■■■□□ 14.8
UPF1Q92900 ATP2A3-207ENST00000570773 989 ntTSL 218.74■□□□□ 0.591e-7■■■□□ 14.8
UPF1Q92900 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.54■□□□□ 0.42e-8■■■□□ 14.8
UPF1Q92900 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC27.54■■■□□ 24e-7■■■□□ 14.8
UPF1Q92900 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.48■■□□□ 1.194e-7■■■□□ 14.8
UPF1Q92900 IFRD2-210ENST00000474556 1812 ntTSL 521.23■□□□□ 0.994e-7■■■□□ 14.8
UPF1Q92900 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.944e-7■■■□□ 14.8
UPF1Q92900 TFR2-204ENST00000462090 1844 ntTSL 520.05■□□□□ 0.84e-7■■■□□ 14.8
UPF1Q92900 IFRD2-203ENST00000426499 664 ntTSL 519.9■□□□□ 0.784e-7■■■□□ 14.8
UPF1Q92900 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.736e-10■■■□□ 14.8
UPF1Q92900 TFR2-212ENST00000476304 2421 ntTSL 519.07■□□□□ 0.644e-7■■■□□ 14.8
UPF1Q92900 TFR2-213ENST00000490084 2196 ntTSL 218.01■□□□□ 0.474e-7■■■□□ 14.8
UPF1Q92900 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.34■□□□□ 0.374e-7■■■□□ 14.8
UPF1Q92900 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.074e-7■■■□□ 14.8
UPF1Q92900 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.144e-7■■■□□ 14.8
UPF1Q92900 TFR2-206ENST00000465294 2763 ntTSL 212.82□□□□□ -0.364e-7■■■□□ 14.8
UPF1Q92900 MTPAP-205ENST00000488290 4103 ntTSL 212.05□□□□□ -0.484e-7■■■□□ 14.8
UPF1Q92900 KIAA1143-202ENST00000484437 507 ntTSL 511.42□□□□□ -0.582e-8■■■□□ 14.8
UPF1Q92900 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.042e-8■■■□□ 14.8
UPF1Q92900 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.334e-7■■■□□ 14.8
UPF1Q92900 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC8.37□□□□□ -1.077e-7■■■□□ 14.8
UPF1Q92900 GPX3-202ENST00000517973 612 ntTSL 3 BASIC19.56■□□□□ 0.721e-6■■■□□ 14.8
UPF1Q92900 GPX3-204ENST00000520059 316 ntTSL 314.51□□□□□ -0.091e-6■■■□□ 14.8
UPF1Q92900 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC17.64■□□□□ 0.412e-11■■■□□ 14.7
UPF1Q92900 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.152e-11■■■□□ 14.7
UPF1Q92900 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.719e-8■■■□□ 14.7
UPF1Q92900 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.459e-8■■■□□ 14.7
UPF1Q92900 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.532e-7■■■□□ 14.7
UPF1Q92900 TRAPPC2-201ENST00000359680 2716 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.92e-7■■■□□ 14.7
UPF1Q92900 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.129e-8■■■□□ 14.7
UPF1Q92900 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.79e-8■■■□□ 14.7
UPF1Q92900 MAZ-204ENST00000561855 672 ntTSL 519.3■□□□□ 0.683e-7■■■□□ 14.7
UPF1Q92900 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.041e-6■■■□□ 14.7
UPF1Q92900 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.85□□□□□ -0.031e-6■■■□□ 14.7
UPF1Q92900 OSBP2-212ENST00000452656 2763 ntTSL 1 (best)14.43□□□□□ -0.11e-6■■■□□ 14.7
UPF1Q92900 OSBP2-206ENST00000431368 3050 ntTSL 512.93□□□□□ -0.341e-6■■■□□ 14.7
UPF1Q92900 OSBP2-208ENST00000437268 3580 ntTSL 2 BASIC12.67□□□□□ -0.381e-6■■■□□ 14.7
UPF1Q92900 OSBP2-204ENST00000407373 3669 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.551e-6■■■□□ 14.7
UPF1Q92900 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC11.51□□□□□ -0.571e-6■■■□□ 14.7
UPF1Q92900 ATXN7L3-212ENST00000593073 527 ntTSL 410.84□□□□□ -0.674e-8■■■□□ 14.7
UPF1Q92900 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.379e-40■■■□□ 14.7
UPF1Q92900 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.213e-9■■■□□ 14.7
UPF1Q92900 SMG1-211ENST00000565324 12465 ntTSL 1 (best)5□□□□□ -1.613e-7■■■□□ 14.7
UPF1Q92900 LDLRAP1-203ENST00000470950 995 ntTSL 321.17■□□□□ 0.983e-8■■■□□ 14.7
UPF1Q92900 LDLRAP1-204ENST00000474283 913 ntTSL 317.74■□□□□ 0.433e-8■■■□□ 14.7
UPF1Q92900 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.613e-7■■■□□ 14.7
UPF1Q92900 TNFRSF14-212ENST00000475523 1645 ntTSL 1 (best)29.23■■■□□ 2.272e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.782e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-209ENST00000463835 872 ntTSL 225.07■■□□□ 1.62e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-215ENST00000482602 434 ntTSL 524.97■■□□□ 1.592e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-213ENST00000480305 494 ntTSL 524.56■■□□□ 1.522e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-210ENST00000466750 2603 ntTSL 216.51■□□□□ 0.232e-8■■■□□ 14.7
UPF1Q92900 TNFRSF14-208ENST00000463471 4255 ntTSL 212.66□□□□□ -0.382e-8■■■□□ 14.7
UPF1Q92900 PHF1-208ENST00000486845 1099 ntTSL 530.43■■■□□ 2.467e-8■■■□□ 14.7
UPF1Q92900 PHF1-209ENST00000487667 1930 ntTSL 524.07■■□□□ 1.447e-8■■■□□ 14.7
UPF1Q92900 PHF1-211ENST00000495509 1752 ntTSL 219.62■□□□□ 0.737e-8■■■□□ 14.7
UPF1Q92900 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.51■□□□□ 0.557e-8■■■□□ 14.7
UPF1Q92900 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.547e-8■■■□□ 14.7
UPF1Q92900 PRKCZ-215ENST00000479263 1747 ntTSL 225.81■■□□□ 1.721e-7■■■□□ 14.7
Retrieved 100 of 15,879 protein–RNA pairs in 106.2 ms