Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 KRT18P31-201ENST00000506277 1292 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 AC111152.3-201ENST00000569699 673 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 RN7SL510P-201ENST00000581311 263 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 AC009154.2-201ENST00000621177 724 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 AL691432.3-201ENST00000621860 400 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 RNF165-205ENST00000588679 2904 ntBASIC20.23■□□□□ 0.83
CCDC60Q8IWA6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 AC005336.2-201ENST00000593183 939 ntBASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 AC132938.6-201ENST00000623828 1655 ntBASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC60Q8IWA6 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 AL121772.3-201ENST00000610840 674 ntBASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC60Q8IWA6 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.2■□□□□ 0.83
CCDC60Q8IWA6 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 TPM4P1-201ENST00000436100 807 ntBASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 AC091304.2-201ENST00000564639 760 ntBASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 PHGDH-209ENST00000641074 1780 ntBASIC20.2■□□□□ 0.82
CCDC60Q8IWA6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms