Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 AC211429.1-201ENST00000415277 523 ntBASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.23■□□□□ 0.51
LDB1Q86U70 AL512604.3-201ENST00000569583 964 ntBASIC18.23■□□□□ 0.51
LDB1Q86U70 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 AC097493.4-201ENST00000641197 219 ntBASIC18.23■□□□□ 0.51
LDB1Q86U70 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
LDB1Q86U70 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB1Q86U70 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB1Q86U70 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB1Q86U70 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LDB1Q86U70 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LDB1Q86U70 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB1Q86U70 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB1Q86U70 GCSHP2-201ENST00000560971 527 ntBASIC18.22■□□□□ 0.51
LDB1Q86U70 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB1Q86U70 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LDB1Q86U70 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
LDB1Q86U70 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB1Q86U70 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LDB1Q86U70 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB1Q86U70 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB1Q86U70 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB1Q86U70 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB1Q86U70 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 AL024508.2-201ENST00000607749 1894 ntBASIC18.21■□□□□ 0.51
LDB1Q86U70 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 LIN28AP1-201ENST00000429574 405 ntBASIC18.21■□□□□ 0.51
LDB1Q86U70 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB1Q86U70 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB1Q86U70 NEK4P2-201ENST00000580004 1012 ntBASIC18.21■□□□□ 0.51
LDB1Q86U70 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LDB1Q86U70 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LDB1Q86U70 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LDB1Q86U70 AL157888.1-201ENST00000631930 593 ntBASIC18.21■□□□□ 0.51
LDB1Q86U70 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
LDB1Q86U70 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
LDB1Q86U70 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 NOC2LP2-201ENST00000407594 1944 ntBASIC18.21■□□□□ 0.51
LDB1Q86U70 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB1Q86U70 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LDB1Q86U70 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB1Q86U70 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB1Q86U70 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LDB1Q86U70 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB1Q86U70 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB1Q86U70 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms