Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 AC008556.1-201ENST00000610908 2040 ntBASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 ABALON-201ENST00000629058 1903 ntBASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 GPAT2P1-201ENST00000444924 1672 ntBASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SH3RF1Q7Z6J0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
SH3RF1Q7Z6J0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 HLA-F-220ENST00000434407 884 ntBASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 DRAXINP1-201ENST00000437611 948 ntBASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 RNF126P1-202ENST00000569893 925 ntBASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 AC036111.1-201ENST00000533973 1582 ntBASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SH3RF1Q7Z6J0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 AL023284.2-201ENST00000405850 579 ntBASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.88■□□□□ 0.93
SH3RF1Q7Z6J0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 TOB2P1-201ENST00000469761 992 ntBASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 AC139530.3-201ENST00000620344 690 ntBASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 AL157888.1-201ENST00000631930 593 ntBASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SH3RF1Q7Z6J0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms