Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 AL445675.2-201ENST00000620291 557 ntBASIC16.35■□□□□ 0.21
CCDC58Q4VC31 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC58Q4VC31 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 AC131212.4-201ENST00000623606 975 ntBASIC16.34■□□□□ 0.21
CCDC58Q4VC31 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 AC092850.2-201ENST00000623821 2697 ntBASIC16.34■□□□□ 0.21
CCDC58Q4VC31 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 REXO1L9P-201ENST00000604264 2108 ntBASIC16.34■□□□□ 0.21
CCDC58Q4VC31 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC58Q4VC31 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC58Q4VC31 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 AC069152.1-201ENST00000438030 544 ntBASIC16.33■□□□□ 0.2
CCDC58Q4VC31 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC58Q4VC31 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC58Q4VC31 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms