Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD3Q3KNS1 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 GMCL1P1-201ENST00000463439 1581 ntBASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 SEC1P-202ENST00000473944 940 ntBASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 NEK4P2-201ENST00000580004 1012 ntBASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 AC024243.1-201ENST00000609234 778 ntBASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD3Q3KNS1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC018470.1-201ENST00000624790 3129 ntBASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AL671277.2-201ENST00000458060 996 ntBASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 MIR3180-4-201ENST00000582223 153 ntBASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC010240.3-201ENST00000607688 395 ntBASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD3Q3KNS1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD3Q3KNS1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms