Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.48■□□□□ 0.87
TPM4P67936 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 AL109923.1-201ENST00000618799 583 ntBASIC20.48■□□□□ 0.87
TPM4P67936 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
TPM4P67936 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TPM4P67936 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.48■□□□□ 0.87
TPM4P67936 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.47■□□□□ 0.87
TPM4P67936 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TPM4P67936 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TPM4P67936 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.47■□□□□ 0.87
TPM4P67936 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TPM4P67936 AC091390.4-202ENST00000476426 537 ntBASIC20.47■□□□□ 0.87
TPM4P67936 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TPM4P67936 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.47■□□□□ 0.87
TPM4P67936 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.47■□□□□ 0.87
TPM4P67936 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TPM4P67936 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TPM4P67936 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.47■□□□□ 0.87
TPM4P67936 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.47■□□□□ 0.87
TPM4P67936 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 AC106820.2-201ENST00000563775 3264 ntBASIC20.47■□□□□ 0.87
TPM4P67936 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TPM4P67936 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.46■□□□□ 0.87
TPM4P67936 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TPM4P67936 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TPM4P67936 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TPM4P67936 NIFKP9-201ENST00000419265 221 ntBASIC20.46■□□□□ 0.87
TPM4P67936 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.46■□□□□ 0.87
TPM4P67936 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.46■□□□□ 0.87
TPM4P67936 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.46■□□□□ 0.87
TPM4P67936 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TPM4P67936 AC008403.3-201ENST00000598924 454 ntBASIC20.46■□□□□ 0.87
TPM4P67936 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.46■□□□□ 0.87
TPM4P67936 AL023875.1-201ENST00000640777 796 ntBASIC20.46■□□□□ 0.87
TPM4P67936 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TPM4P67936 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TPM4P67936 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.46■□□□□ 0.87
TPM4P67936 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
TPM4P67936 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
TPM4P67936 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
TPM4P67936 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TPM4P67936 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TPM4P67936 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TPM4P67936 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.45■□□□□ 0.86
TPM4P67936 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.45■□□□□ 0.86
TPM4P67936 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.45■□□□□ 0.86
TPM4P67936 AP003097.1-201ENST00000530657 1135 ntBASIC20.45■□□□□ 0.86
TPM4P67936 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TPM4P67936 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TPM4P67936 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TPM4P67936 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.45■□□□□ 0.86
TPM4P67936 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TPM4P67936 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.44■□□□□ 0.86
TPM4P67936 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM4P67936 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.44■□□□□ 0.86
TPM4P67936 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TPM4P67936 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM4P67936 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TPM4P67936 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TPM4P67936 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TPM4P67936 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TPM4P67936 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms