Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
HDAC4P56524 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
HDAC4P56524 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.07■□□□□ 0.64
HDAC4P56524 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.07■□□□□ 0.64
HDAC4P56524 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDAC4P56524 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.07■□□□□ 0.64
HDAC4P56524 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.07■□□□□ 0.64
HDAC4P56524 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HDAC4P56524 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC4P56524 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 TSPY5P-201ENST00000426936 936 ntBASIC19.06■□□□□ 0.64
HDAC4P56524 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.06■□□□□ 0.64
HDAC4P56524 PVRIG2P-201ENST00000435460 978 ntBASIC19.06■□□□□ 0.64
HDAC4P56524 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 AC034232.1-201ENST00000506026 1064 ntBASIC19.06■□□□□ 0.64
HDAC4P56524 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HDAC4P56524 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
HDAC4P56524 AC079602.3-201ENST00000623931 403 ntBASIC19.06■□□□□ 0.64
HDAC4P56524 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
HDAC4P56524 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.06■□□□□ 0.64
HDAC4P56524 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HDAC4P56524 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC4P56524 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HDAC4P56524 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.05■□□□□ 0.64
HDAC4P56524 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 RNF152P1-201ENST00000397754 604 ntBASIC19.05■□□□□ 0.64
HDAC4P56524 STARP1-201ENST00000397973 869 ntBASIC19.05■□□□□ 0.64
HDAC4P56524 AK4P3-201ENST00000418260 669 ntBASIC19.05■□□□□ 0.64
HDAC4P56524 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.05■□□□□ 0.64
HDAC4P56524 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.05■□□□□ 0.64
HDAC4P56524 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HDAC4P56524 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HDAC4P56524 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HDAC4P56524 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HDAC4P56524 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC4P56524 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HDAC4P56524 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.04■□□□□ 0.64
HDAC4P56524 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.04■□□□□ 0.64
HDAC4P56524 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HDAC4P56524 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HDAC4P56524 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.04■□□□□ 0.64
HDAC4P56524 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HDAC4P56524 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms