Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.11■□□□□ 0.49
CXCL12P48061 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.11■□□□□ 0.49
CXCL12P48061 AC009947.1-201ENST00000444350 727 ntBASIC18.11■□□□□ 0.49
CXCL12P48061 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.11■□□□□ 0.49
CXCL12P48061 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.11■□□□□ 0.49
CXCL12P48061 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.11■□□□□ 0.49
CXCL12P48061 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.11■□□□□ 0.49
CXCL12P48061 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CXCL12P48061 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL12P48061 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.1■□□□□ 0.49
CXCL12P48061 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL12P48061 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
CXCL12P48061 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
CXCL12P48061 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CXCL12P48061 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.1■□□□□ 0.49
CXCL12P48061 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.1■□□□□ 0.49
CXCL12P48061 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL12P48061 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL12P48061 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.1■□□□□ 0.49
CXCL12P48061 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.1■□□□□ 0.49
CXCL12P48061 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.1■□□□□ 0.49
CXCL12P48061 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.1■□□□□ 0.49
CXCL12P48061 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CXCL12P48061 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.09■□□□□ 0.49
CXCL12P48061 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CXCL12P48061 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.09■□□□□ 0.49
CXCL12P48061 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CXCL12P48061 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CXCL12P48061 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.09■□□□□ 0.49
CXCL12P48061 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CXCL12P48061 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.09■□□□□ 0.49
CXCL12P48061 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.09■□□□□ 0.49
CXCL12P48061 MIR1199-201ENST00000621445 119 ntBASIC18.09■□□□□ 0.49
CXCL12P48061 AP000867.4-201ENST00000641616 219 ntBASIC18.09■□□□□ 0.49
CXCL12P48061 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.09■□□□□ 0.49
CXCL12P48061 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CXCL12P48061 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.08■□□□□ 0.49
CXCL12P48061 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CXCL12P48061 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.08■□□□□ 0.49
CXCL12P48061 KRT18P28-201ENST00000453838 1332 ntBASIC18.08■□□□□ 0.49
CXCL12P48061 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL12P48061 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL12P48061 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.08■□□□□ 0.48
CXCL12P48061 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL12P48061 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.08■□□□□ 0.48
CXCL12P48061 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.08■□□□□ 0.48
CXCL12P48061 PGM5P2-202ENST00000637225 1043 ntBASIC18.08■□□□□ 0.48
CXCL12P48061 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.08■□□□□ 0.48
CXCL12P48061 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL12P48061 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.08■□□□□ 0.48
CXCL12P48061 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.08■□□□□ 0.48
CXCL12P48061 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CXCL12P48061 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CXCL12P48061 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.08■□□□□ 0.48
CXCL12P48061 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.08■□□□□ 0.48
CXCL12P48061 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.07■□□□□ 0.48
CXCL12P48061 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CXCL12P48061 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms