Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.19■□□□□ 0.34
SOX3P41225 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.19■□□□□ 0.34
SOX3P41225 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.19■□□□□ 0.34
SOX3P41225 KRT18P38-201ENST00000449496 1282 ntBASIC17.19■□□□□ 0.34
SOX3P41225 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.19■□□□□ 0.34
SOX3P41225 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.19■□□□□ 0.34
SOX3P41225 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.19■□□□□ 0.34
SOX3P41225 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.19■□□□□ 0.34
SOX3P41225 MYC-208ENST00000641036 567 ntBASIC17.19■□□□□ 0.34
SOX3P41225 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
SOX3P41225 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SOX3P41225 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.19■□□□□ 0.34
SOX3P41225 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.19■□□□□ 0.34
SOX3P41225 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 HEIH-201ENST00000623091 1652 ntBASIC17.18■□□□□ 0.34
SOX3P41225 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.18■□□□□ 0.34
SOX3P41225 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.18■□□□□ 0.34
SOX3P41225 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 AC112497.1-201ENST00000624824 639 ntBASIC17.18■□□□□ 0.34
SOX3P41225 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SOX3P41225 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.18■□□□□ 0.34
SOX3P41225 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.18■□□□□ 0.34
SOX3P41225 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 MIR564-202ENST00000385049 94 ntBASIC17.17■□□□□ 0.34
SOX3P41225 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SOX3P41225 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.17■□□□□ 0.34
SOX3P41225 KRT18P23-201ENST00000435622 1283 ntBASIC17.17■□□□□ 0.34
SOX3P41225 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.17■□□□□ 0.34
SOX3P41225 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SOX3P41225 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.17■□□□□ 0.34
SOX3P41225 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SOX3P41225 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.17■□□□□ 0.34
SOX3P41225 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms