Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.35■□□□□ 0.53
PTPN4P29074 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTPN4P29074 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PTPN4P29074 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.34■□□□□ 0.53
PTPN4P29074 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN4P29074 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.34■□□□□ 0.53
PTPN4P29074 EGLN1P1-201ENST00000531623 762 ntBASIC18.34■□□□□ 0.53
PTPN4P29074 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.34■□□□□ 0.53
PTPN4P29074 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.34■□□□□ 0.53
PTPN4P29074 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN4P29074 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
PTPN4P29074 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PTPN4P29074 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTPN4P29074 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTPN4P29074 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN4P29074 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.33■□□□□ 0.53
PTPN4P29074 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTPN4P29074 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.33■□□□□ 0.53
PTPN4P29074 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.33■□□□□ 0.53
PTPN4P29074 AC073508.3-201ENST00000619697 1419 ntBASIC18.33■□□□□ 0.53
PTPN4P29074 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.33■□□□□ 0.52
PTPN4P29074 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PTPN4P29074 CRYGFP-201ENST00000418459 633 ntBASIC18.33■□□□□ 0.52
PTPN4P29074 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.33■□□□□ 0.52
PTPN4P29074 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PTPN4P29074 AC130371.2-201ENST00000619443 611 ntBASIC18.33■□□□□ 0.52
PTPN4P29074 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 AC135776.1-201ENST00000319817 2481 ntBASIC18.33■□□□□ 0.52
PTPN4P29074 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PTPN4P29074 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 AC080080.1-201ENST00000625121 2420 ntBASIC18.33■□□□□ 0.52
PTPN4P29074 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.33■□□□□ 0.52
PTPN4P29074 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
PTPN4P29074 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTPN4P29074 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.33■□□□□ 0.52
PTPN4P29074 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN4P29074 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN4P29074 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
PTPN4P29074 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.32■□□□□ 0.52
PTPN4P29074 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PTPN4P29074 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
PTPN4P29074 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 TSPY14P-201ENST00000303979 915 ntBASIC18.32■□□□□ 0.52
PTPN4P29074 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.32■□□□□ 0.52
PTPN4P29074 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.32■□□□□ 0.52
PTPN4P29074 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.32■□□□□ 0.52
PTPN4P29074 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTPN4P29074 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms