Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.9■□□□□ 0.14
COL8A1P27658 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
COL8A1P27658 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 MIR4469-201ENST00000583919 79 ntBASIC15.9■□□□□ 0.14
COL8A1P27658 AC025062.2-201ENST00000605477 670 ntBASIC15.9■□□□□ 0.14
COL8A1P27658 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 AC008735.5-201ENST00000623544 497 ntBASIC15.9■□□□□ 0.14
COL8A1P27658 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
COL8A1P27658 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC15.89■□□□□ 0.13
COL8A1P27658 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL8A1P27658 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL8A1P27658 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.89■□□□□ 0.13
COL8A1P27658 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.89■□□□□ 0.13
COL8A1P27658 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL8A1P27658 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.89■□□□□ 0.13
COL8A1P27658 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 AC105339.3-201ENST00000560043 636 ntBASIC15.89■□□□□ 0.13
COL8A1P27658 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.89■□□□□ 0.13
COL8A1P27658 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.89■□□□□ 0.13
COL8A1P27658 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.89■□□□□ 0.13
COL8A1P27658 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.89■□□□□ 0.13
COL8A1P27658 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL8A1P27658 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
COL8A1P27658 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL8A1P27658 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.88■□□□□ 0.13
COL8A1P27658 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.88■□□□□ 0.13
COL8A1P27658 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.88■□□□□ 0.13
COL8A1P27658 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.88■□□□□ 0.13
COL8A1P27658 ALG1L5P-201ENST00000482043 771 ntBASIC15.88■□□□□ 0.13
COL8A1P27658 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.88■□□□□ 0.13
COL8A1P27658 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.88■□□□□ 0.13
COL8A1P27658 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.88■□□□□ 0.13
COL8A1P27658 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 AP002472.1-201ENST00000577490 586 ntBASIC15.88■□□□□ 0.13
COL8A1P27658 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
COL8A1P27658 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.88■□□□□ 0.13
COL8A1P27658 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 GABARAPL3-202ENST00000624044 1851 ntBASIC15.88■□□□□ 0.13
COL8A1P27658 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL8A1P27658 AL356309.3-201ENST00000624132 1934 ntBASIC15.88■□□□□ 0.13
COL8A1P27658 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.87■□□□□ 0.13
COL8A1P27658 AC034236.2-201ENST00000606662 1610 ntBASIC15.87■□□□□ 0.13
COL8A1P27658 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.87■□□□□ 0.13
COL8A1P27658 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.87■□□□□ 0.13
COL8A1P27658 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.87■□□□□ 0.13
COL8A1P27658 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL8A1P27658 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL8A1P27658 AC009947.1-201ENST00000444350 727 ntBASIC15.87■□□□□ 0.13
COL8A1P27658 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms