Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AC105339.3-201ENST00000560043 636 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.32■□□□□ 0.52
COL4A2P08572 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 AC073592.4-201ENST00000623827 446 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 SLC25A24-204ENST00000569674 2357 ntBASIC18.31■□□□□ 0.52
COL4A2P08572 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
COL4A2P08572 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.31■□□□□ 0.52
COL4A2P08572 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.31■□□□□ 0.52
COL4A2P08572 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 AL139424.1-201ENST00000607572 797 ntBASIC18.31■□□□□ 0.52
COL4A2P08572 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 ANO7L1-203ENST00000602586 1720 ntBASIC18.31■□□□□ 0.52
COL4A2P08572 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL4A2P08572 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.31■□□□□ 0.52
COL4A2P08572 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL4A2P08572 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
COL4A2P08572 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 DNAJB3-202ENST00000449667 1266 ntBASIC18.3■□□□□ 0.52
COL4A2P08572 AC004967.1-201ENST00000453589 447 ntBASIC18.3■□□□□ 0.52
COL4A2P08572 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A2P08572 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.3■□□□□ 0.52
COL4A2P08572 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.3■□□□□ 0.52
COL4A2P08572 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
COL4A2P08572 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
COL4A2P08572 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL4A2P08572 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.3■□□□□ 0.52
COL4A2P08572 AC007952.6-201ENST00000573168 2673 ntBASIC18.29■□□□□ 0.52
COL4A2P08572 AC003957.1-201ENST00000625108 2673 ntBASIC18.29■□□□□ 0.52
COL4A2P08572 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A2P08572 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A2P08572 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A2P08572 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 RNA5SP416-201ENST00000516838 111 ntBASIC18.29■□□□□ 0.52
COL4A2P08572 AC002347.1-201ENST00000569543 541 ntBASIC18.29■□□□□ 0.52
COL4A2P08572 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A2P08572 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL4A2P08572 PMPCAP1-201ENST00000508114 1576 ntBASIC18.29■□□□□ 0.52
COL4A2P08572 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A2P08572 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A2P08572 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL4A2P08572 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A2P08572 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.29■□□□□ 0.52
COL4A2P08572 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.29■□□□□ 0.52
COL4A2P08572 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
COL4A2P08572 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.29■□□□□ 0.52
COL4A2P08572 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL4A2P08572 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A2P08572 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A2P08572 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.28■□□□□ 0.52
COL4A2P08572 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A2P08572 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL4A2P08572 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
COL4A2P08572 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL4A2P08572 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A2P08572 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL4A2P08572 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.28■□□□□ 0.52
COL4A2P08572 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A2P08572 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A2P08572 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A2P08572 AC096633.1-201ENST00000422446 749 ntBASIC18.28■□□□□ 0.52
COL4A2P08572 DNAJB3-201ENST00000446806 729 ntBASIC18.28■□□□□ 0.52
COL4A2P08572 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.28■□□□□ 0.52
COL4A2P08572 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL4A2P08572 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms