Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 AL162412.1-201ENST00000567129 965 ntBASIC13.75□□□□□ -0.21
HLA-DQA1P01909 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 MST1L-201ENST00000442552 2185 ntBASIC13.75□□□□□ -0.21
HLA-DQA1P01909 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DQA1P01909 STK4-201ENST00000372801 2038 ntTSL 2 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 AC022517.1-201ENST00000592429 346 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 AC013268.1-206ENST00000638368 961 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 AC112229.1-201ENST00000639295 961 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 AC008556.1-201ENST00000610908 2040 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 MTMR9LP-203ENST00000426597 1545 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 UBALD1-205ENST00000590891 2641 ntBASIC13.74□□□□□ -0.21
HLA-DQA1P01909 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HLA-DQA1P01909 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 TERF1P5-201ENST00000477545 1207 ntBASIC13.73□□□□□ -0.21
HLA-DQA1P01909 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 AC011767.1-201ENST00000617410 1153 ntBASIC13.73□□□□□ -0.21
HLA-DQA1P01909 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HLA-DQA1P01909 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms