Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDLRP01130 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.66■□□□□ 0.42
LDLRP01130 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LDLRP01130 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.66■□□□□ 0.42
LDLRP01130 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.65■□□□□ 0.42
LDLRP01130 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LDLRP01130 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 KRT18P48-201ENST00000434763 852 ntBASIC17.65■□□□□ 0.42
LDLRP01130 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.65■□□□□ 0.42
LDLRP01130 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 AL031985.4-201ENST00000642138 673 ntBASIC17.65■□□□□ 0.42
LDLRP01130 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LDLRP01130 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
LDLRP01130 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
LDLRP01130 LINC00896-202ENST00000609602 2128 ntBASIC17.65■□□□□ 0.42
LDLRP01130 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDLRP01130 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 FSCN1P1-201ENST00000568912 1481 ntBASIC17.64■□□□□ 0.41
LDLRP01130 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.41
LDLRP01130 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.64■□□□□ 0.41
LDLRP01130 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 AC009947.2-201ENST00000444014 672 ntBASIC17.64■□□□□ 0.41
LDLRP01130 YBX1P10-201ENST00000444752 975 ntBASIC17.64■□□□□ 0.41
LDLRP01130 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.64■□□□□ 0.41
LDLRP01130 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LDLRP01130 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LDLRP01130 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.64■□□□□ 0.41
LDLRP01130 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.64■□□□□ 0.41
LDLRP01130 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.64■□□□□ 0.41
LDLRP01130 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDLRP01130 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 AC012313.1-201ENST00000593393 3059 ntBASIC17.63■□□□□ 0.41
LDLRP01130 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDLRP01130 MESTP1-201ENST00000404287 994 ntBASIC17.63■□□□□ 0.41
LDLRP01130 AL031133.1-201ENST00000406807 723 ntBASIC17.63■□□□□ 0.41
LDLRP01130 FAM8A6P-201ENST00000407496 1135 ntBASIC17.63■□□□□ 0.41
LDLRP01130 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.63■□□□□ 0.41
LDLRP01130 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LDLRP01130 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.63■□□□□ 0.41
LDLRP01130 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.63■□□□□ 0.41
LDLRP01130 AC128688.1-201ENST00000487626 519 ntBASIC17.63■□□□□ 0.41
LDLRP01130 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms