Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
CTDNEP1O95476 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CTDNEP1O95476 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTDNEP1O95476 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CTDNEP1O95476 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.14■□□□□ 0.97
CTDNEP1O95476 AL137013.1-201ENST00000432946 1228 ntBASIC21.14■□□□□ 0.97
CTDNEP1O95476 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 YBX1P2-201ENST00000489612 999 ntBASIC21.14■□□□□ 0.97
CTDNEP1O95476 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CTDNEP1O95476 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDNEP1O95476 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 LIN28AP1-201ENST00000429574 405 ntBASIC21.13■□□□□ 0.97
CTDNEP1O95476 KRT18P57-201ENST00000443599 1254 ntBASIC21.13■□□□□ 0.97
CTDNEP1O95476 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 AC006011.2-201ENST00000621313 1158 ntBASIC21.13■□□□□ 0.97
CTDNEP1O95476 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDNEP1O95476 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDNEP1O95476 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 AC012317.2-201ENST00000623305 2251 ntBASIC21.12■□□□□ 0.97
CTDNEP1O95476 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 AC006116.8-202ENST00000587620 1550 ntBASIC21.12■□□□□ 0.97
CTDNEP1O95476 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDNEP1O95476 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CTDNEP1O95476 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDNEP1O95476 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDNEP1O95476 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDNEP1O95476 AC100803.2-201ENST00000562459 1963 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 BX664615.1-201ENST00000443558 458 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 ATP5G1P1-201ENST00000448724 379 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 KRT18P38-201ENST00000449496 1282 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 AC140113.3-201ENST00000605663 199 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDNEP1O95476 AL391807.1-203ENST00000604392 2365 ntBASIC21.11■□□□□ 0.97
CTDNEP1O95476 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.11■□□□□ 0.97
CTDNEP1O95476 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms